RNA id: TU163486


Basic Information

Item Value
RNA id TU163486
length 3094
lncRNA type sense_over
GC content 0.39
exon number 3
gene id AMCG00001292
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23565151 ~ 23685121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAATCCAGCAAAAGCATTAACTCTGTACATGTGGAAAGTTTAAAATTAGCTACAGTTAAGTTTACAAAATCAATGACAATCATACCCATTGGTGTTttaagtgcttttatttttcataattcagTCTTTTAGATCTTATTGAAAGCAGCCACATCCATAGACTGTACGTAATCTTCAAATGCTGTGATAGCCTCTTCCAGCTGGTCTGTTCCCACCTTGTCATCTTCAACCACACACTGAATCTGGAGCTTCTTGATGCCATATCCTACTGGTACCAGTTTGAGGATCCCCAGAGTAGGCCATCCATTTGAATGCTGCGCACACACTTCTCCATCTCAGCCATGTCAGTTTCATCATCCCAGGGCTTCACGTCGAGCAGGATTGAGGACTTGGCAATAAGCACTGGCTCTGCAGAAGAGTAAGAAAGCACCTTTATCAGTTACCTTCTGCAGCTTTCAGCATCAGCTTTGCAATCTAATCCAAGGCTAATGCTGGCAACAATCAGATTAGAAAATAAGTATCCATCACGGATTCAGCCGAAAGATGGTGATTTGGATCATCATTTTACCAGCTTTGCTAACCATTGCATTATGGGATAATGCAGCATAAACCTGCATTTTATGGCTCTTGAAGATCACATCTAAACACTATGATGTAGATCTTAGAATGCAAGATCTATCAGATTCTAACTgcattaactaaaatattcactggatggtggggggggggtggttttCATAAAGCTAAATATTGGAAGATCAGGGTAGGGTAAGCAATGGGCATACTTTTGGATTTCTTTGCTTCATAGGCTGCCAGTCGCTGCTCCTTCACTCTCTTGGCCTCTTCACTCTccCTTCATCATCAGAACCAAAGAGGtcaatatcatcatcatcatcatccttgGACTCTGCAGTAGCAGGGGCTGAAGTGGTGTCCTCCATACCAGCTGGGCCATACTTTCCCAGAGGCTTCTTTACTCCAGGAAGGCTGAGAAAAAAAGGAGAGCGGGTGAGACTTGGACATTAAACATGTGTGCACAAAGATCCTGAAGAAGTCACTGGTCTGGTCAGTTTCAATAGTTGTGCATCACTGTCTCAGGTGAAAGATGGTGAAAGGAATCATCATTAAACCAGTTATTGGCATTCCTAATTTCAGGGACAGAAACCGGACACCCCTCCTCTAGTATTAAGCAGTTTAATCTGCATCAAATTGTAATACACATTAGAAAAACACTAATGGGACTAACTATCCATCACCCATAATTTAATAGAGAAGCCTGCAGTCTCTGGAATAACTCAAAACTACAATACAAATGGAGTCCGATTTCTATCCCATTGCCCATCATCTAGACATACCTTGCTTTCTCTTTCTGGTAGGACTTGATGTGGTTGTACCAACGTAGGGCATGAAAGAGCTCAGCTGCTGGGGGTGCAGATAGAGCCTCAAAAACAGCCACATCTGCCTGGGATGCAACATACCTTCATAACAttcagggagaaaaaaaaaaataatctaaaatcaGAGTTTGAAGTAGATTGCTTTCCTCTTAAGTGTAAATGGGGGGATAACCAAGAAGGTGGgtgatttaatgtattaaattgatatcaaaatgaaaatgtactatATAGATCTATCATGAGGGTGTGTGTATATCAAAATCAGACCATATTGATACACTGATCCACCAAGAtttccatacatacataacacattttgcaggtataaaagggaaaagataagctatagatcgaagcaaatggaaaaaatgttaGTGCAggagtggatcaatataggctgctATTCATGTGTGCGAtaaacatacagctctggacaaaatgtagaccactccaagttcagaaatcaatgttaagtggtctatttttttccagagctgtatgtgtacacatatatatatatatatatatatatacacatacatacatatatacatacatatacatatacacacacatcaatccatctatatacacatgtatacactaaaaataaatagctgcatttaaaatatggatTTATACATAAGCTAGATCTAATAATGTGTGCATTTCCTTACACTACGTAATTTAATAGAGGAATCTTAAGGGGTGAGGGCCCAATGACTTAGCGTTTAAGgccataattatatatttaatatacatctaCCAGCCGACATAATCTACATCCACAGCTTCGAAAACCCTACCCTTTACACTGCCGACATGATGTTAAAATACACcgatacatacataaatccaTTAGTATATTTCCAAAACCTAATATAAATCACCTTCAGATTATTGTAATGACTACTTATTGACTCACTTGcttaaaacaaactcaaaacacatttattcacatCATGGTGCAGGCAATACAGAACCATAGAAAGTTTACAGACGAGAgaaggccatttgacccatcgtgctcgtttggtgtccattaataaccaagttaACTGACTTCGAGTTACTCGATACACTTAAAAACCTAAATAGAACATTGAACAATCATTAAATCACAGTTTattgcttaattattatttggattattataatgtatttttttaaaatataaaatttacTTAAACGCAAGACAACGTGTCACCACCAGCATGACTCTTTGCTGAGCTCAAATATGCCAtcgaataattataatacactaGTATTACCGACCCCTCGATATAACTTTTGTCTGCCAAAAAGTCGTTGAGGACCTTCAGGCCGGCCGGTGATTTAAGATCTCCAAATCCCATATTGCTAGATTTAAAACGCAGACCTCGTTTTAACGGATAACCAACAGGATCCAGTCAATCCAGCACAGcggaagagaaaaagaaagagtaTAGGCCAAAACCTACTTTATACCAGCACTAACGGAAGTAAAGCCCCGCCTCTTCTGCATATGGCTACGTTCACGTCTGCGCAGAATTTGAATTCGTCTGCGTGAATTCAGACGGAATATACGTCACCAGGTCACGCAGGCTAAAAAGTCCGCACAGACGCGCAGCTTCTCAAGAGGAACTGCGCTGGAGCAGCCGCGGCTTCAAAACAATCAAAGAGTGCTGTCTTATAAAGACGTGTGTATCAGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163399 lncRNA upstream 335046 23280811 ~ 23281334 (+) True G130365
TU163376 lncRNA upstream 391783 23224032 ~ 23224597 (+) True G130348
TU163374 lncRNA upstream 398880 23214937 ~ 23217500 (+) True G130346
TU163171 lncRNA upstream 811322 22799097 ~ 22805058 (+) True G130166
TU163165 lncRNA upstream 991177 22624958 ~ 22625203 (+) True G130160
TU163512 lncRNA downstream 108028 23729005 ~ 23729229 (+) True G130461
TU163544 lncRNA downstream 234743 23855720 ~ 23856116 (+) True G130492
TU163591 lncRNA downstream 302234 23923211 ~ 23923877 (+) True G130531
TU163590 lncRNA downstream 303901 23924878 ~ 23926011 (+) True G130530
TU163619 lncRNA downstream 431845 24052822 ~ 24120461 (+) True G130552
AMCG00001285 mRNA upstream 496425 23100907 ~ 23119955 (+) True AMCG00001285
AMCG00001284 mRNA upstream 582881 23031304 ~ 23033499 (+) True AMCG00001284
AMCG00001279 mRNA upstream 863524 22646113 ~ 22752856 (+) True AMCG00001279
AMCG00001276 mRNA upstream 1009125 22584027 ~ 22607255 (+) True AMCG00001276
AMCG00001275 mRNA upstream 1050760 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001294 mRNA downstream 100846 23721823 ~ 23759069 (+) True AMCG00001294
AMCG00001300 mRNA downstream 282351 23903328 ~ 23913809 (+) True AMCG00001300
AMCG00001298 mRNA downstream 327472 23948449 ~ 23990082 (+) True AMCG00001298
AMCG00001297 mRNA downstream 451452 24072429 ~ 24090849 (+) True AMCG00001297
AMCG00001299 mRNA downstream 559273 24180250 ~ 24207621 (+) True AMCG00001299
TU163362 other upstream 449724 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 2339501 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 2537510 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 2673983 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 2691140 20918558 ~ 20925240 (+) True AMCG00001241
TU163702 other downstream 812816 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 963202 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 3235622 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 3330931 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile