RNA id: AMCG00001279


Basic Information

Item Value
RNA id AMCG00001279
length 1821
RNA type mRNA
GC content 0.52
exon number 16
gene id AMCG00001279
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22646113 ~ 22752856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTGACTCTCGTGGTGCTGTCCAGTGCTGAAACAGTGCTGCTGTATTGCCAGGCAACATGCATCTTCCGGGtaTTGAAGGAGCATATGTTAGTCCACCTAGTACTGCAGAAACTGGGAAAGGCTGACGAGACAAAGGATGAACTCTTTGAAGAGAGTGTGGTGAATTTCAACAAGCAGCTGGACACTGATCTCTTATGGACAGATTTCCATCAGAAACTCGTGGACCATGCGCTCATCTCCATGGATACCTATCTCGGACAGTTCCCAGACATCAAGGTAGGGAGTACAACAGGGAGGAAAGGAGGGAAGTTGGAAATAaggaacctgaacctgaacctgaacctgaacctgaacctgaacctgaacctgaacggGCCAAAGACCAAGAGCCTTCCTTCttcctatttTAAGCCTTTCAGAGGTCCGGAGCTAGTTAAGGCCGACGCCCAGCAAGAGACCCGTATTGCTAAGCGAGGTCGGAAGTTAGTAGACTTCGACAGCGCCAGACACCATTTTGCAGCCCTGCAGCACGCAAAGAAGAAGGATGATGTGAAGATTGCCAAGGCAGAAGAGGATCTGGGGAAAGCCCAGAAGGTGTTTGAGGAGATCAATTTGGATCTCCAGGAAGAGTTACCGTCTTTGTGGAATAGTCGTGTTGGCTTCTATGTTAACACATTCCAGAGCGTGGCCGGTTTGGAAGAGAAATTCCACAGAGAGATGGGCAAATTTGAGGCCCCTGGGCCTATGCAGGATGAAGCCAGCCTGCTTGATTTGGATTTTGATCCACTCAAACCAGCGGTCACCCCAGGGGGCACAGCCACCTCCCCTGCCTCGCAGCCTGAGCAGACCCCATCACCCGCCCCTCCCGATCAGGGATGCTCAGATGCTGGGGAGGAGCGCTGGGATGAGGGGGCTGCAGAGCCCCAATGTGACGAAGTTAAAGATGAGGCCCAATGGGATGAGAGTGCCACTGAGCCCCTGTGGGATGACACTTCTTCCCAAGCACAGTGGGGTGACCAAGCTACCCAGCCCCAGTGGGATGACAATTCTTCCCAGGCACAGTGGGGTGACCAAGCTAACCAGCCCCAGTGGGATGACAATTCTTCCCAGGCACAGTGGGGTGACCAAGCTACTCAGCCCCAGTGGGATGATGCTGCGGCCCAGCAGCAGTGGGACAATAGCGCCGCCATAGACGTTACCACTGCTGCTGATTCTGCTGCTGACAGTGAGCTTCAGAACaaTTCTCTTCCTGCTGTGGTGGCAGAGACTTTGCCAGGAACAACCAATGGAGCTCCCACCAATCATAGCGTGTCATCAGAGGGGGCAGAAATGCCTCCTGGATTTCTGTTTAAGGTTCAAGCTATGCATGATTACACAACCAATGATGCAGATGAACTGGAGTTGAAAGCCCGGGATGTGGTGTTAGTGATTGTCTTTGAGAATCAAGAGGAGCAGCATGTGGTGATCCAGTCTTCTTTGCTGGTCCTTGTCCACGGTCTGCTCCAGCAGCAACTCCAGGATGGGAATAGAGTCCGAGGCCACTCCAGCTACCAATTCATGGCCACTAGCCTGTTCAGCTCTGGCATTTCCACTCTTCTCCAGACCACACTGGGAACCAGGTTGCCCCTAATCCAGGCCCCATCCATGGAGTTCCTGATTCCTGCCATCATTCTCACCTCACAGAGTGAAGGCCAGCGACATGGGAATGGCAGTAAGATAACTTGCAGCAGCCCCTGGTGCACAACGAATGAAGGCACCATTAGCTGGGATGAGCCAGTCAGAGAGGTCAGAGTTTATGCAACAACTTTCACCATTAAGTAA

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163165 lncRNA upstream 20910 22624958 ~ 22625203 (+) True G130160
TU163145 lncRNA upstream 29956 22615284 ~ 22616157 (+) True G130144
TU163154 lncRNA upstream 63149 22582698 ~ 22582964 (+) True G130153
TU163153 lncRNA upstream 63492 22582316 ~ 22582621 (+) True G130152
TU163149 lncRNA upstream 145321 22500035 ~ 22500792 (+) False AMCG00001278
TU163171 lncRNA downstream 46241 22799097 ~ 22805058 (+) True G130166
TU163374 lncRNA downstream 462081 23214937 ~ 23217500 (+) True G130346
TU163376 lncRNA downstream 471176 23224032 ~ 23224597 (+) True G130348
TU163399 lncRNA downstream 527955 23280811 ~ 23281334 (+) True G130365
TU163484 lncRNA downstream 863524 23616380 ~ 23620977 (+) False AMCG00001292
AMCG00001276 mRNA upstream 38858 22584027 ~ 22607255 (+) True AMCG00001276
AMCG00001275 mRNA upstream 80493 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001277 mRNA upstream 103860 22540350 ~ 22542253 (+) True AMCG00001277
AMCG00001278 mRNA upstream 115277 22500165 ~ 22530836 (+) True AMCG00001278
AMCG00001272 mRNA upstream 195223 22384720 ~ 22450890 (+) True AMCG00001272
AMCG00001284 mRNA downstream 278448 23031304 ~ 23033499 (+) True AMCG00001284
AMCG00001285 mRNA downstream 348051 23100907 ~ 23119955 (+) True AMCG00001285
AMCG00001292 mRNA downstream 812295 23565151 ~ 23685121 (+) False AMCG00001292
AMCG00001294 mRNA downstream 968967 23721823 ~ 23759069 (+) True AMCG00001294
AMCG00001300 mRNA downstream 1150472 23903328 ~ 23913809 (+) True AMCG00001300
TU162879 other upstream 1369234 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 1567243 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 1703716 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 1720873 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 1969256 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 413407 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 1680937 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 1831323 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 4103743 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 4199052 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile