RNA id: TU163165


Basic Information

Item Value
RNA id TU163165
length 246
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G130160
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22624958 ~ 22625203 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGATcacatcttcctagtgcacatcaaagacagacatctgctttttgtatcaatcacctcttcacgggaggacagatcgttaacggacccggacctgtatcttctgattggatgaacagccataagatgttacgtcattttcctataaagttgtactcatgtttgtaaacattaagtctcactgaaggaattattcctgacgtggggcttccgagcggctcgattaaagttctgtttgcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163145 lncRNA upstream 8801 22615284 ~ 22616157 (+) True G130144
TU163154 lncRNA upstream 41994 22582698 ~ 22582964 (+) True G130153
TU163153 lncRNA upstream 42337 22582316 ~ 22582621 (+) True G130152
TU163149 lncRNA upstream 124166 22500035 ~ 22500792 (+) False AMCG00001278
TU163121 lncRNA upstream 298080 22326640 ~ 22326878 (+) True G130125
TU163171 lncRNA downstream 173894 22799097 ~ 22805058 (+) True G130166
TU163374 lncRNA downstream 589734 23214937 ~ 23217500 (+) True G130346
TU163376 lncRNA downstream 598829 23224032 ~ 23224597 (+) True G130348
TU163399 lncRNA downstream 655608 23280811 ~ 23281334 (+) True G130365
TU163484 lncRNA downstream 991177 23616380 ~ 23620977 (+) False AMCG00001292
AMCG00001276 mRNA upstream 17703 22584027 ~ 22607255 (+) True AMCG00001276
AMCG00001275 mRNA upstream 59338 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001277 mRNA upstream 82705 22540350 ~ 22542253 (+) True AMCG00001277
AMCG00001278 mRNA upstream 94122 22500165 ~ 22530836 (+) True AMCG00001278
AMCG00001272 mRNA upstream 174068 22384720 ~ 22450890 (+) True AMCG00001272
AMCG00001279 mRNA downstream 20910 22646113 ~ 22752856 (+) True AMCG00001279
AMCG00001284 mRNA downstream 406101 23031304 ~ 23033499 (+) True AMCG00001284
AMCG00001285 mRNA downstream 475704 23100907 ~ 23119955 (+) True AMCG00001285
AMCG00001292 mRNA downstream 939948 23565151 ~ 23685121 (+) False AMCG00001292
AMCG00001294 mRNA downstream 1096620 23721823 ~ 23759069 (+) True AMCG00001294
TU162879 other upstream 1348079 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 1546088 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 1682561 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 1699718 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 1948101 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 541060 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 1808590 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 1958976 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 4231396 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 4326705 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile