DATASET ID: PRJNA554650 (6.5dpf)

Basic information

Tissue / Organ brain
Experiment type baseline
Sample 6.5dpf, whole brain of nr1d1:VNP fish
Source dataset ID SRR9685040
Project ID PRJNA554650
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Midbrain Glut+ ENSDARG00000009311 (pvalb6) protein_coding marker DOI:10.1038/nbt.4103
    2 Optic Tectum Gaba+++ ENSDARG00000015537 (gad2) protein_coding marker DOI:10.1038/nbt.4103
    3 Hyp ENSDARG00000068691 (kctd4) protein_coding marker DOI:10.1038/nbt.4103
    4 Pallium (Glut+) ENSDARG00000023771 (gabrb3) protein_coding marker DOI:10.1038/nbt.4103
    4 Pallium (Glut+) ENSDARG00000044098 (egr2a) protein_coding marker DOI:10.1038/nbt.4103
    5 Nascent neurons ENSDARG00000037997 (tubb5) protein_coding marker DOI:10.1038/nbt.4103
    6 Nascent neurons ENSDARG00000037997 (tubb5) protein_coding marker DOI:10.1038/nbt.4103
    7 Nascent neurons ENSDARG00000037997 (tubb5) protein_coding marker DOI:10.1038/nbt.4103
    8 Progenitors ENSDARG00000038205 (her2) protein_coding marker DOI:10.1038/nbt.4103
    8 Progenitors ENSDARG00000054560 (her15.2) protein_coding marker DOI:10.1038/nbt.4103
    8 Progenitors ENSDARG00000054562 (her15.1) protein_coding marker DOI:10.1038/nbt.4103
    9 Dorsal habenula ENSDARG00000042970 (gng8) protein_coding marker DOI:10.1038/nbt.4103
    9 Dorsal habenula ENSDARG00000078859 (g0s2) protein_coding marker DOI:10.1038/nbt.4103
    9 Dorsal habenula ENSDARG00000069843 (kctd12.1) protein_coding marker DOI:10.1038/nbt.4103
    10 Nascent neurons ENSDARG00000037997 (tubb5) protein_coding marker DOI:10.1038/nbt.4103
    11 Progenitors ENSDARG00000038205 (her2) protein_coding marker DOI:10.1038/nbt.4103
    11 Progenitors ENSDARG00000054560 (her15.2) protein_coding marker DOI:10.1038/nbt.4103
    11 Progenitors ENSDARG00000054562 (her15.1) protein_coding marker DOI:10.1038/nbt.4103
    12 Progenitors ENSDARG00000038205 (her2) protein_coding marker DOI:10.1038/nbt.4103
    12 Progenitors ENSDARG00000054560 (her15.2) protein_coding marker DOI:10.1038/nbt.4103
    12 Progenitors ENSDARG00000054562 (her15.1) protein_coding marker DOI:10.1038/nbt.4103
    13 Radial glia ENSDARG00000036427 (slc3a2a) protein_coding marker DOI:10.1038/nbt.4103
    13 Radial glia ENSDARG00000041623 (mt2) protein_coding marker DOI:10.1038/nbt.4103
    13 Radial glia ENSDARG00000045979 (zgc:153704) protein_coding marker DOI:10.1038/nbt.4103
    14 Granule cells ENSDARG00000097478 (qkia) protein_coding marker DOI:10.1038/nbt.4103
    15 Endothelium ENSDARG00000104068 (gstp1) protein_coding marker DOI:10.1038/nbt.4103
    16 Progenitors ENSDARG00000038205 (her2) protein_coding marker DOI:10.1038/nbt.4103
    16 Progenitors ENSDARG00000054560 (her15.2) protein_coding marker DOI:10.1038/nbt.4103
    16 Progenitors ENSDARG00000054562 (her15.1) protein_coding marker DOI:10.1038/nbt.4103
    17 Endothelium ENSDARG00000104068 (gstp1) protein_coding marker DOI:10.1038/nbt.4103
    18 Microglia ENSDARG00000040295 (apoeb) protein_coding marker DOI:10.1038/nbt.4103
    19 Purkinje cells ENSDARG00000057661 (aldoca) protein_coding marker DOI:10.1038/nbt.4103
    19 Purkinje cells ENSDARG00000039098 (ca8) protein_coding marker DOI:10.1038/nbt.4103
    19 Purkinje cells ENSDARG00000062448 (skor1b) protein_coding marker DOI:10.1038/nbt.4103
    20 Hyp ENSDARG00000035832 (pyyb) protein_coding marker DOI:10.1038/nbt.4103
    20 Hyp ENSDARG00000023181 (pcp4l1) protein_coding marker DOI:10.1038/nbt.4103
    20 Hyp ENSDARG00000017174 (dlx2b) protein_coding marker DOI:10.1038/nbt.4103
    21 Oligodendrocyte precursor cells ENSDARG00000036670 (aplnrb) protein_coding marker DOI:10.1038/nbt.4103
    21 Oligodendrocyte precursor cells ENSDARG00000002172 (aplnra) protein_coding marker DOI:10.1038/nbt.4103
    21 Oligodendrocyte precursor cells ENSDARG00000040948 (olig1) protein_coding marker DOI:10.1038/nbt.4103
    21 Oligodendrocyte precursor cells ENSDARG00000058821 (sema5a) protein_coding marker DOI:10.1038/nbt.4103
    22 Cranial ganglion ENSDARG00000004930 (lmo7a) protein_coding marker DOI:10.1038/nbt.4103
    23 Pineal gland ENSDARG00000035798 (gngt1) protein_coding marker DOI:10.1038/nbt.4103
    23 Pineal gland ENSDARG00000009637 (rcvrn3) protein_coding marker DOI:10.1038/nbt.4103
    23 Pineal gland ENSDARG00000111827 (rcvrnb) protein_coding marker DOI:10.1038/nbt.4103
    23 Pineal gland ENSDARG00000044199 (gnat1) protein_coding marker DOI:10.1038/nbt.4103
    23 Pineal gland ENSDARG00000012610 (saga) protein_coding marker DOI:10.1038/nbt.4103

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)