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| Tissue / Organ | embryo |
| Experiment type | baseline |
| Sample | 5dpf, a single-cell transcriptome atlas for zebrafish development |
| Source dataset ID | SRR10095964 |
| Project ID | PRJNA564810 |
| Species | Danio rerio |
| Cluster | Cell type | Gene id (symbol) | Gene type | Marker class | Evidence |
|---|---|---|---|---|---|
| 1 | Cranial neural crest | ENSDARG00000044935 (hpdb) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 1 | Cranial neural crest | ENSDARG00000045979 (zgc:153704) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 1 | Cranial neural crest | ENSDARG00000071095 (abi3bpb) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 2 | Neuron | ENSDARG00000018259 (atp1a3a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 3 | Neuron | ENSDARG00000003469 (neurod4) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 4 | Periderm cells | ENSDARG00000040534 (epcam) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 4 | Periderm cells | ENSDARG00000016691 (cd9b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 4 | Periderm cells | ENSDARG00000055514 (icn2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 6 | Chondrocytes | ENSDARG00000073699 (col9a1a) | protein_coding | marker | DOI:10.7554/eLife.16415 |
| 7 | Neuron | ENSDARG00000003469 (neurod4) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 8 | Hematopoietic cells | ENSDARG00000045142 (hbae5) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 8 | Hematopoietic cells | ENSDARG00000092945 (si:ch211-250g4.3) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 8 | Hematopoietic cells | ENSDARG00000029019 (epb41b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 9 | Epidermal cells | ENSDARG00000102750 (cdh1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 10 | Neuroblast | ENSDARG00000041799 (cx43) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 10 | Neuroblast | ENSDARG00000102340 (ptn) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 10 | Neuroblast | ENSDARG00000091579 (si:ch211-66e2.5) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 11 | Neuron | ENSDARG00000070107 (six7) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 11 | Neuron | ENSDARG00000075295 (tulp1a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 11 | Neuron | ENSDARG00000010680 (gngt2a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 12 | Skeletal muscle cells | ENSDARG00000007344 (tcap) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 12 | Skeletal muscle cells | ENSDARG00000020574 (atp2a1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 13 | Epidermal cells | ENSDARG00000102750 (cdh1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 14 | Multipotent cells | ENSDARG00000055186 (ccr9a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 15 | Enteric smooth muscle | ENSDARG00000045180 (acta2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 15 | Enteric smooth muscle | ENSDARG00000045408 (tagln) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 16 | Photoreceptor cells | ENSDARG00000029898 (cnga1a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 16 | Photoreceptor cells | ENSDARG00000070666 (rhol) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 16 | Photoreceptor cells | ENSDARG00000058803 (grk1a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 17 | Intesinal epithelial cells | ENSDARG00000016081 (cldn15la) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 17 | Intesinal epithelial cells | ENSDARG00000101979 (eps8l3a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 17 | Intesinal epithelial cells | ENSDARG00000112049 (cldn15a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Iridophore | ENSDARG00000060345 (apoda.1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Iridophore | ENSDARG00000075629 (si:dkey-197i20.6) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Iridophore | ENSDARG00000062688 (gpnmb) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Iridophore | ENSDARG00000055172 (si:ch211-256m1.8) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Iridophore | ENSDARG00000091792 (akap12a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 19 | Hepatocytes | ENSDARG00000016771 (tfa) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 19 | Hepatocytes | ENSDARG00000087143 (serpina7) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 19 | Hepatocytes | ENSDARG00000015866 (apoa2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Hepatocytes | ENSDARG00000016771 (tfa) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Hepatocytes | ENSDARG00000087143 (serpina7) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Hepatocytes | ENSDARG00000015866 (apoa2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 21 | Endothelium | ENSDARG00000105215 (kdrl) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 21 | Endothelium | ENSDARG00000060263 (pecam1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 21 | Endothelium | ENSDARG00000030125 (sox7) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 21 | Endothelium | ENSDARG00000103533 (clec14a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 21 | Endothelium | ENSDARG00000036616 (gpr182) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 22 | Oligodendrocytes | ENSDARG00000036186 (mbpa) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 23 | Enteric smooth muscle | ENSDARG00000045180 (acta2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 23 | Enteric smooth muscle | ENSDARG00000045408 (tagln) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 24 | Epidermal cells | ENSDARG00000088514 (and1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Lens | ENSDARG00000037402 (lim2.3) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Lens | ENSDARG00000102129 (crygn1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Lens | ENSDARG00000014803 (cryba1l2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Lens | ENSDARG00000068507 (crybb1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 26 | Monocytes | ENSDARG00000090873 (ccl34a.4) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 26 | Monocytes | ENSDARG00000103466 (ccl35.1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 26 | Monocytes | ENSDARG00000059294 (marco) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 27 | Leukocytes | ENSDARG00000087909 (il4) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 27 | Leukocytes | ENSDARG00000093248 (si:dkey-238m4.4) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 27 | Leukocytes | ENSDARG00000105530 (si:dkey-19b23.14) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 27 | Leukocytes | ENSDARG00000007534 (itln1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 27 | Leukocytes | ENSDARG00000036940 (ctss1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 28 | Pancreatic epsilon cells | ENSDARG00000044204 (endou) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 28 | Pancreatic epsilon cells | ENSDARG00000090899 (sycn.3) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 28 | Pancreatic epsilon cells | ENSDARG00000024503 (c6ast3) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 29 | Epiphysis | ENSDARG00000045153 (slc16a8) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 29 | Epiphysis | ENSDARG00000078618 (inpp5kb) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 29 | Epiphysis | ENSDARG00000087059 (selenou1b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 29 | Epiphysis | ENSDARG00000028862 (rdh20) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
