DATASET ID: PRJNA610520 (3.5dpf)

Basic information

Tissue / Organ caudal hematopoietic tissue
Experiment type baseline
Sample 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
Source dataset ID SRR11243177
Project ID PRJNA610520
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Monocytes ENSDARG00000042725 (cebpb) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    2 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    2 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    2 HSPCs ENSDARG00000078004 (drl) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    3 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    3 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    3 HSPCs ENSDARG00000078004 (drl) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    4 Erythroid cells ENSDARG00000089124 (hbae1.3) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    4 Erythroid cells ENSDARG00000096667 (hemgn) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    4 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    5 Endothelium ENSDARG00000054632 (fli1a) protein_coding marker DOI:10.1038/srep44644
    6 Myeloid cells ENSDARG00000036074 (cebpa) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    6 Myeloid cells ENSDARG00000057789 (lyz) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    7 Neuron ENSDARG00000055216 (tuba1c) protein_coding marker DOI:10.1016/j.cell.2008.01.02
    7 Neuron ENSDARG00000006497 (rtn1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    7 Neuron ENSDARG00000045639 (elavl4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    7 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    8 Myeloid cells ENSDARG00000036074 (cebpa) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    8 Myeloid cells ENSDARG00000057789 (lyz) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    9 Epidermal cells ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    9 Epidermal cells ENSDARG00000032849 (ndrg1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    9 Epidermal cells ENSDARG00000016691 (cd9b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    11 Endothelium ENSDARG00000054632 (fli1a) protein_coding marker DOI:10.1038/srep44644
    12 Epithelial cells ENSDARG00000040534 (epcam) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    12 Epithelial cells ENSDARG00000055514 (icn2) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    12 Epithelial cells ENSDARG00000092947 (cyt1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    12 Epithelial cells ENSDARG00000017624 (krt4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    13 Neuron ENSDARG00000055216 (tuba1c) protein_coding marker DOI:10.1016/j.cell.2008.01.02
    13 Neuron ENSDARG00000006497 (rtn1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    13 Neuron ENSDARG00000045639 (elavl4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    13 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    14 Macrophages ENSDARG00000077809 (il13) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    15 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    16 Fibroblasts ENSDARG00000069093 (col2a1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    17 Muscle cells ENSDARG00000053254 (mylpfa) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    17 Muscle cells ENSDARG00000099197 (actc1b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    17 Muscle cells ENSDARG00000017441 (mylz3) protein_coding marker DOI:10.1016/j.cell.2008.01.025

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)