DATASET ID: PRJNA610520 (4.5dpf)

Basic information

Tissue / Organ caudal hematopoietic tissue
Experiment type baseline
Sample 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
Source dataset ID SRR11243184
Project ID PRJNA610520
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    1 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    1 HSPCs ENSDARG00000078004 (drl) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    2 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    2 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    2 HSPCs ENSDARG00000078004 (drl) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    3 Erythroid cells ENSDARG00000089475 (hbae1.1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    3 Erythroid cells ENSDARG00000089124 (hbae1.3) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    3 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    4 Myeloid cells ENSDARG00000036074 (cebpa) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    4 Myeloid cells ENSDARG00000057789 (lyz) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    5 Endothelium ENSDARG00000054632 (fli1a) protein_coding marker DOI:10.1038/srep44644
    6 Monocytes ENSDARG00000042725 (cebpb) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    7 Myeloid cells ENSDARG00000036074 (cebpa) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    7 Myeloid cells ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    8 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    8 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    8 HSPCs ENSDARG00000078004 (drl) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    9 Epithelial cells ENSDARG00000040534 (epcam) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    9 Epithelial cells ENSDARG00000017624 (krt4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    10 Neuron ENSDARG00000055216 (tuba1c) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    10 Neuron ENSDARG00000006497 (rtn1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    10 Neuron ENSDARG00000045639 (elavl4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    10 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    11 Endothelium ENSDARG00000054632 (fli1a) protein_coding marker DOI:10.1038/srep44644
    12 Erythroid cells ENSDARG00000089475 (hbae1.1) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    12 Erythroid cells ENSDARG00000089124 (hbae1.3) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    12 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    13 Macrophages ENSDARG00000077809 (il13) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    14 Fibroblasts ENSDARG00000069093 (col2a1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    15 Epithelial cells ENSDARG00000040534 (epcam) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    15 Epithelial cells ENSDARG00000017624 (krt4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    16 Epidermal cells ENSDARG00000032849 (ndrg1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    16 Epidermal cells ENSDARG00000016691 (cd9b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    17 Neuron ENSDARG00000055216 (tuba1c) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    17 Neuron ENSDARG00000006497 (rtn1a) protein_coding marker DOI:10.1016/j.cell.2008.01.025

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)