GENE ID: ENSDARG00000030980

Symbol Location Gene type Genome version Species
csrp1b 6: 54838269 ~ 54845622 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000030980 (csrp1b), yellow represents other genes.
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  • The more connections, the bigger symbol size.


    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl Smooth muscle cells (cluster: 3)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated Smooth muscle cells (cluster: 5)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated Smooth muscle cells (cluster: 6)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Smooth muscle cells (cluster: 3)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS Smooth muscle cells (cluster: 7)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS Smooth muscle cells (cluster: 6)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA Smooth muscle cells (cluster: 5)
    		 marker
    		 DOI:10.1038/s41586-021-03484-5
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Neuron (cluster: 17)
    		 potential marker
    		 NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Enteric smooth muscle (cluster: 23)
    		 potential marker
    		 NA
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Smooth muscle cells (cluster: 6)
    		 potential marker
    		 NA
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Oligodendrocytes (cluster: 15)
    		 potential marker
    		 NA
    GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated Mesenchymal cells (cluster: 2)
    		 potential marker
    		 NA
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Smooth muscle cells (cluster: 3)
    		 potential marker
    		 NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Chromaffin cells (cluster: 11)
    		 potential marker
    		 NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Smooth muscle cells (cluster: 11)
    		 potential marker
    		 NA
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (3dpf) head baseline 3dpf, untreatment
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih
    PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR)
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-

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