Fish Single-cell RNA Database

GENE ID: ENSDARG00000001760

Symbol	Location	Gene type	Genome version	Species
tnxba	16: 16621242 ~ 16649764 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000001760 (tnxba), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000075140	NA	7: 20629411 ~ 20636877 (+)
ENSDARG00000036430	sat2a	7: 20645121 ~ 20651736 (+)
ENSDARG00000035891	acana	7: 48761646 ~ 48787379 (+)
ENSDARG00000086150	wrap53	7: 20917966 ~ 20939108 (+)
ENSDARG00000089292	adgrl1a	3: 47498433 ~ 47876427 (-)
ENSDARG00000075899	NA	2: 1714734 ~ 1904551 (+)
ENSDARG00000061121	adgrl3.1	1: 22943551 ~ 23157583 (-)
ENSDARG00000092057	si:dkey-90l23.1	9: 8372167 ~ 8375675 (+)
ENSDARG00000094478	si:ch1073-75o15.4	9: 8380728 ~ 8385896 (+)
ENSDARG00000094616	zgc:113984	9: 8390737 ~ 8393808 (+)
ENSDARG00000001760	tnxba	16: 16621242 ~ 16649764 (-)
ENSDARG00000060081	crb2b	8: 2878756 ~ 2906214 (+)
ENSDARG00000039964	fgfbp2a	14: 46449070 ~ 46451249 (-)
ENSDARG00000052623	bsdc1	13: 45980163 ~ 46000113 (+)
ENSDARG00000014907	htra1b	12: 11388724 ~ 11457625 (-)
ENSDARG00000030215	matn1	19: 43314700 ~ 43338280 (+)
ENSDARG00000093704	si:dkeyp-46h3.8	19: 27546401 ~ 27570363 (-)
ENSDARG00000062206	skiv2l	19: 26869428 ~ 26923957 (-)
ENSDARG00000070857	si:dkey-32e6.6	23: 20068880 ~ 20100436 (-)
ENSDARG00000095322	fkbpl	23: 19106056 ~ 19119443 (+)
ENSDARG00000060106	crb2a	21: 8478774 ~ 8513192 (-)
ENSDARG00000102241	zgc:136410	21: 44505613 ~ 44512893 (-)
ENSDARG00000069356	adgrl2a	11: 7432533 ~ 7737642 (+)
ENSDARG00000090929	si:dkeyp-98a7.3	22: 25681911 ~ 25688794 (+)
ENSDARG00000088895	si:dkeyp-98a7.7	22: 25715925 ~ 25717213 (+)
ENSDARG00000013687	cilp2	22: 18469004 ~ 18485470 (+)
ENSDARG00000026764	ahsg1	22: 37874691 ~ 37881714 (+)
ENSDARG00000074538	si:dkey-179j5.5	22: 24990337 ~ 24992532 (-)
ENSDARG00000111882	si:ch211-194m7.4	25: 13198224 ~ 13202208 (-)
ENSDARG00000104947	si:ch211-194m7.8	25: 13313941 ~ 13320986 (-)
ENSDARG00000045799	acanb	25: 19213872 ~ 19224298 (-)
--	si:dkey-237h12.3	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	Chondrocytes (cluster: 1) Chondrocytes (cluster: 3)	potential marker potential marker	NA NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	Chondrocytes (cluster: 1)	potential marker	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Chondrocytes (cluster: 6)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Chondrocytes (cluster: 15)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Chondrocytes (cluster: 16)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000001760

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences