Fish Single-cell RNA Database

GENE ID: ENSDARG00000019835

Symbol	Location	Gene type	Genome version	Species
nkx2.1	17: 38262408 ~ 38264625 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000019835 (nkx2.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000013789	sim1b	4: 929557 ~ 948842 (-)
ENSDARG00000038386	ascl1a	4: 17417111 ~ 17419193 (+)
ENSDARG00000005453	foxp2	4: 6423041 ~ 6623645 (-)
ENSDARG00000035415	ptger4b	5: 35398745 ~ 35401568 (+)
ENSDARG00000007944	lhx1b	5: 56268436 ~ 56274174 (+)
ENSDARG00000015879	pax8	5: 72407526 ~ 72415578 (-)
ENSDARG00000101919	foxj1a	3: 60716904 ~ 60733722 (+)
ENSDARG00000029930	NA	6: 54280365 ~ 54290227 (-)
ENSDARG00000103589	gata6	2: 4207209 ~ 4217887 (+)
ENSDARG00000002330	lhx8a	2: 11205795 ~ 11210168 (+)
ENSDARG00000079266	foxe1	1: 26701610 ~ 26702992 (-)
ENSDARG00000025495	nhlh2	9: 32978302 ~ 32981660 (+)
ENSDARG00000077813	si:dkey-34f9.3	9: 45789887 ~ 45794194 (+)
ENSDARG00000040946	olig2	9: 32751428 ~ 32753535 (-)
ENSDARG00000004712	tbr1b	9: 51427826 ~ 51436377 (-)
ENSDARG00000023316	sim1a	16: 1465624 ~ 1503023 (-)
ENSDARG00000020084	tg	16: 31530762 ~ 31598771 (-)
ENSDARG00000056666	sp8b	16: 19536614 ~ 19538776 (+)
ENSDARG00000037195	tshr	20: 6035427 ~ 6079923 (+)
ENSDARG00000059236	ptger4a	8: 902750 ~ 912821 (-)
ENSDARG00000005392	slc5a5	8: 13364950 ~ 13382351 (+)
ENSDARG00000060564	slc25a21	17: 38030327 ~ 38233021 (+)
ENSDARG00000019835	nkx2.1	17: 38262408 ~ 38264625 (+)
ENSDARG00000003411	foxa2	17: 42565998 ~ 42568498 (-)
ENSDARG00000070769	foxg1a	17: 29117027 ~ 29119362 (-)
ENSDARG00000087094	foxa	14: 33973146 ~ 33981544 (-)
ENSDARG00000054879	six3b	12: 25600685 ~ 25603341 (+)
ENSDARG00000005026	tshz1	19: 21266008 ~ 21416407 (+)
ENSDARG00000057936	lhx5	21: 15913128 ~ 15929041 (-)
ENSDARG00000006896	lhx6	10: 9372702 ~ 9395220 (+)
ENSDARG00000056979	lhx9	22: 23238790 ~ 23253481 (-)
ENSDARG00000089042	foxb1a	25: 34154171 ~ 34156152 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000019835

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences