Fish Single-cell RNA Database

GENE ID: --

Symbol	Location	Gene type	Genome version	Species
hoxa3a	--	--	--	Danio rerio

PPI (protein-protein interaction) results are shown above.

Green is -- (hoxa3a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000058038	eml3	7: 17816006 ~ 17905528 (+)
ENSDARG00000013434	hira	5: 18047111 ~ 18072844 (+)
ENSDARG00000015879	pax8	5: 72407526 ~ 72415578 (-)
ENSDARG00000029263	hoxb3a	3: 23697997 ~ 23771945 (+)
ENSDARG00000000175	hoxb2a	3: 23752150 ~ 23754831 (+)
ENSDARG00000052150	pbx4	3: 52999962 ~ 53076469 (+)
ENSDARG00000026834	cdr2l	3: 59951010 ~ 59981476 (-)
ENSDARG00000036542	pknox1.2	1: 46963993 ~ 46984142 (-)
ENSDARG00000061885	satb2	9: 32560399 ~ 32604414 (-)
ENSDARG00000019717	pbx2	16: 48616220 ~ 48643191 (+)
ENSDARG00000036254	hoxa13b	16: 20895904 ~ 20897836 (+)
ENSDARG00000030038	NA	20: 14458930 ~ 14463012 (-)
ENSDARG00000013615	pbx3b	8: 33895773 ~ 34065573 (-)
ENSDARG00000044098	egr2a	17: 43663504 ~ 43677471 (-)
ENSDARG00000078026	zcchc24	13: 30579260 ~ 30645965 (-)
ENSDARG00000042826	egr2b	12: 8483838 ~ 8504278 (-)
ENSDARG00000054030	hoxb5b	12: 27129659 ~ 27131735 (+)
ENSDARG00000100312	hoxa13a	19: 19729506 ~ 19731291 (+)
ENSDARG00000011879	foxn1	15: 28129683 ~ 28161224 (-)
ENSDARG00000002795	meis3	15: 6838039 ~ 6863317 (-)
ENSDARG00000017121	mafba	23: 3405665 ~ 3409140 (-)
ENSDARG00000070986	sergef	25: 8086519 ~ 8138122 (-)
--	hoxa3a	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	Neutrophils (cluster: 8)	potential marker	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	Hindbrain rhombomere (cluster: 1)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: --

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences