G245486


Basic Information

Item Value
gene id G245486
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4209897 ~ 4212081 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU278663
ATTGGAGTACAAATTCATCTTTATTCAATATTTAATTAAACACTTTTTTTACATTACATTTTCCCCCCTAATTTCATTAATAGGAGCAATCAACATGTCAGTAATTATGTTGCATTAAAAGTGCTTCTGTTGCACTGCAGAATACGGTTCTCACATACAGAGAAAAAGACTTTATAATGCATCTTTGACAGGGTCAGTGGGGTAGCAGCACCTTCCCTCTGCCAATGCAGTTGTGAAAACCCTTGGTCCCATCAGGTCCGACAGGCTGACGCACAACCAGGACACTCAAAGACCTCACAATCTGACTGGGCGTCAACAAGCTACCCATCTCAGGCTGAATGACCTGGGCGGCATTTTTACGTCTCTGGACCCACGGGCTGCTCGTGAACCCCAAGTCATCTGGGGAGAGCTCATCCGAGCCCTTGTACCTGCTGAAGGAGGATGTACCAGCTGCAGTGGGAGTGCTGCTGAGAGGATGCGTAGCCAGAGGAGAGGTCACATGACTGCAAGGAAAAAGCTTGCGAGGCAGGAGGGGGCTTCCAACGGGACTGCACAGAGGATTCCTGTAAGGGTCAGAGCGGAAAGTCGATATCCGCGGGATGGCGAGGGGACTGCCGTAGAGGGCCTGTGGGCGGGAGACTCTGCGATTGGGCCGGGGTGAGGCAGGGGCAAAATCAGACTCTGAAGAGCTGCAAACAGCCGAATCCTCCAAAGAATAAATGTACCGCCTGGCTTTTCTGTTAGGCTTTTTTAAACTGTCATTGTCAATACCTTCTTCTGACTCTTCCTCCACTAGGTTTTGGCTCCATCCTGGCTTACGAGTTCCACGGCTACCCAGCAGGACCACACAAATGCCCCTTCCTCCCTGCTCTTCTGCCTTCAGGGCCTCGTAGGCTTTGCGCGCGCCCTCAAGATACTCGTACTCCACCACAGCACACACTTTGCGCCCCAGTTCGAGGTGTTTCTTAGTATAGCGTTTCAGCTCTGCAGGGATCTCTTTTCCTGGCCGCAGAATGCGGAGAGAAGAAATGGTGCCATAGGGGGAAAACACCCGCATTGCGGCTTCCATGATGCCTAGTTGCTCCCCACCCGGTGACCCATTTAACTCATCCTTGACTGGGCCAACGCCATCCAGGAAGTTCCAGGCCAGAAGCAGCTTGCTTGTGGGAATGCACAGGAGCCAGTCGGGCACTGGAGTCCTTCGTCGCACCTTGGTACCAATCTCATTCACTTCCAGCAGTGGAGAGGTTCTTGCAGCCGCCAGGGTGGTGCGCCAGTCTCGCGTGAGATCTCTAATCTATGACAAAACAATGAAAAGCACATTTCCTGATGACAACACTTCTACTCAGATCAAGATGATGTTGGTTAATTTAACCCTCATGTACTGTTGTGGGTCATTTTGACCCGTTTTGATTTTTGAGTTGTCGGAAACATCGGTTAACCTATGTTTTTTTTTTTTTCTTGAAATTGTGACTCTCATTTAGGGTCATGAACATGCATGCAAAGTTTCAACATGCTGATGTGTTTTGACATATACACTAAATTTTGGTTACTTTGGTGATGTTCACGGGTCAATTTGACCTGCATATTTTAATGCACTAAGGCAATTGTACAGACCCAAAATAACATGTCTTGGTTATATTTTGTTATTTTAGTTTTTTACTACCCTATGAAGCTAAAAAAGGAGCTTTTCCTCACTTATTTCAATACAAAAAAAATATATTTTGTCAGCCACATATGGTAAAAATGAGCTATCCATTTATTTTTTCAATCTATCTGAAATACTACATTGTTTTTCTTGAAATTTTGTGACTTTCTCATTTAGGGTCATGAACATGCATGCAAAGTTTCAACACGCGGATGTGTTGTGAAATGTGCGTACAGAAATTTTATACGTTCTTACTGTTTGTGGGTCAATTTGACCGGTATAGACAGCCATTCAAAATCAACTACAGACCCAAAACACTTCTGTGTTGTATGTCAGAACTCCTCAACTCTAGTCCTGAAGTGCCAGTGTCTTACAGAGTTTAACAGCTTTTTATTTTCAAAGTGTGTGAAAATATGAAGTTGTTTTACCTGTTAATTGTCTGTCCCACTTTTTGAGCATAGATATGAAAATAACTTTTCTAACTTAAATTGTTAAAAATCTTGAACACTTCAGAGAAGACTTAAGTTTGGTATCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU278663 True 2185 TUCP 0.45 1 4209897 4212081

Neighbor

gene id symbol gene type direction distance location
CI01000057_04202045_04205390 VMAC coding upstream 4418 4201772 ~ 4205479 (+)
CI01000057_04105710_04123101 RANBP3A, RANBP3 coding upstream 86179 4105710 ~ 4123718 (+)
CI01000057_04088057_04092278 CTNS coding upstream 117619 4088057 ~ 4092278 (+)
CI01000057_04029208_04038844 SLC1A6 coding upstream 170987 4029208 ~ 4038910 (+)
CI01000057_04008460_04012934 TAX1BP3.S, TAX1BP3, MGC83163 coding upstream 196922 4008190 ~ 4012975 (+)
CI01000057_04218508_04219283 GA45B, GADD45B, GADD45BA coding downstream 6253 4218334 ~ 4219894 (+)
CI01000057_04357565_04358136 NA coding downstream 145484 4357565 ~ 4359044 (+)
CI01000057_04364304_04364681 NA coding downstream 151873 4359098 ~ 4365796 (+)
CI01000057_04419591_04430486 PDE4C, CRTC1B coding downstream 207510 4419591 ~ 4430486 (+)
CI01000057_04443549_04450402 RAB3A, RAB3A.L, RAB3AB coding downstream 231468 4443549 ~ 4451138 (+)
G245473 NA non-coding upstream 959 4207939 ~ 4208938 (+)
G245550 NA non-coding upstream 9439 4200238 ~ 4200458 (+)
G245539 NA non-coding upstream 48547 4155797 ~ 4161350 (+)
G245526 NA non-coding upstream 67670 4141151 ~ 4142227 (+)
G245519 NA non-coding upstream 149309 4060202 ~ 4060588 (+)
G245562 NA non-coding downstream 19368 4231449 ~ 4231683 (+)
G245567 NA non-coding downstream 25657 4237738 ~ 4238188 (+)
G245569 NA non-coding downstream 27471 4239552 ~ 4239760 (+)
G245575 NA non-coding downstream 35394 4247475 ~ 4247771 (+)
G245580 NA non-coding downstream 43779 4255860 ~ 4256079 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 365206 3842028 ~ 3844691 (+)
G245401 NA other upstream 671455 3537569 ~ 3538442 (+)
G245231 NA other upstream 917335 3087096 ~ 3292562 (+)
G243991 NA other upstream 1557337 2635237 ~ 2652560 (+)
G243975 NA other upstream 1633045 2576453 ~ 2576852 (+)
G245725 NA other downstream 886604 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1361823 5564489 ~ 5579843 (+)
G245856 NA other downstream 1425573 5637654 ~ 5643340 (+)
G245857 NA other downstream 1443195 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 1699732 5911767 ~ 5917211 (+)

Expression


Co-expression Network