G678820


Basic Information

Item Value
gene id G678820
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1239577 ~ 1239963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799481
GTCACGTCAGTAATTTACGCATTTAGCCTATGCGGTAAGATGATATTCTGAACCCAGAATATAACCCAGTGATTTAAACATAAACTGTAAAAAAAGATGGATGACGCACCTTAACTCTCATGCATTGTAGTAAGTGAAGCTGGCAAGCCGCCAGTGTGCCAATATGGCGCTGACATCTTGAGTCTCGAGTCTGCGCATAGTGAACTTGGAGCCCGAGTCTGCGCAGTAGTGAGCGCGAAGTGCAGCCGCGATATCAAGGTCCCGCCCAAACTCGCGCAGAATCGGTTAATACTGCAGAACAACATTACATCAGTGTAAAATAAACAGTTCTGGTAATGTATAAATAAAGTTAAAGCTCCAATCTCCTCCCGATGATCCAGAAAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799481 True 387 lncRNA 0.44 1 1239577 1239963

Neighbor

gene id symbol gene type direction distance location
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding upstream 14662 1196786 ~ 1224915 (+)
CI01180000_00955725_01050852 SIPA1L2 coding upstream 187751 954922 ~ 1051826 (+)
CI01180000_00947514_00949868 NA coding upstream 288671 946421 ~ 950906 (+)
CI01180000_00862066_00867985 NA coding upstream 371465 860746 ~ 868112 (+)
CI01180000_00812535_00858607 NA coding upstream 380572 811857 ~ 859005 (+)
CI01180000_01372608_01374455 NA coding downstream 130798 1370761 ~ 1374547 (+)
CI01180000_01380859_01385445 NA coding downstream 140738 1380701 ~ 1385783 (+)
CI01180000_01492241_01493781 NA coding downstream 251708 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 302096 1542059 ~ 1546080 (+)
CI01180000_01576739_01578505 GNG4 coding downstream 336776 1576739 ~ 1579406 (+)
G678819 NA non-coding upstream 513 1238807 ~ 1239064 (+)
G678646 NA non-coding upstream 62301 1173635 ~ 1177276 (+)
G678631 NA non-coding upstream 80438 1156322 ~ 1159139 (+)
G678775 NA non-coding upstream 112967 1125938 ~ 1126610 (+)
G678773 NA non-coding upstream 120932 1118289 ~ 1118645 (+)
G678826 NA non-coding downstream 7745 1247708 ~ 1247959 (+)
G678827 NA non-coding downstream 8183 1248146 ~ 1248444 (+)
G678832 NA non-coding downstream 11033 1250996 ~ 1303829 (+)
G678838 NA non-coding downstream 19389 1259352 ~ 1318254 (+)
G678848 NA non-coding downstream 36591 1276554 ~ 1277435 (+)
G678637 NA other upstream 83905 1149551 ~ 1155672 (+)
G678751 NA other upstream 173486 1059843 ~ 1066091 (+)
G678440 NA other upstream 1087925 147934 ~ 151652 (+)
G678946 NA other downstream 278390 1518353 ~ 1612547 (+)
G679076 NA other downstream 555207 1795170 ~ 1799433 (+)
G679324 NA other downstream 1148904 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1449799 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 2313314 3569165 ~ 3573135 (+)

Expression


Co-expression Network