G678853


Basic Information

Item Value
gene id G678853
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1288700 ~ 1303728 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799524
CTGCTTTACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGTAAGCTGTTAAAGCTCCGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799524 True 296 lncRNA 0.44 2 1288700 1303728

Neighbor

gene id symbol gene type direction distance location
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding upstream 63785 1196786 ~ 1224915 (+)
CI01180000_00955725_01050852 SIPA1L2 coding upstream 236874 954922 ~ 1051826 (+)
CI01180000_00947514_00949868 NA coding upstream 337794 946421 ~ 950906 (+)
CI01180000_00862066_00867985 NA coding upstream 420588 860746 ~ 868112 (+)
CI01180000_00812535_00858607 NA coding upstream 429695 811857 ~ 859005 (+)
CI01180000_01372608_01374455 NA coding downstream 67033 1370761 ~ 1374547 (+)
CI01180000_01380859_01385445 NA coding downstream 76973 1380701 ~ 1385783 (+)
CI01180000_01492241_01493781 NA coding downstream 187943 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 238331 1542059 ~ 1546080 (+)
CI01180000_01576739_01578505 GNG4 coding downstream 273011 1576739 ~ 1579406 (+)
G678848 NA non-coding upstream 11265 1276554 ~ 1277435 (+)
G678827 NA non-coding upstream 40256 1248146 ~ 1248444 (+)
G678826 NA non-coding upstream 40741 1247708 ~ 1247959 (+)
G678820 NA non-coding upstream 48737 1239577 ~ 1239963 (+)
G678819 NA non-coding upstream 49636 1238807 ~ 1239064 (+)
G678891 NA non-coding downstream 46190 1349918 ~ 1357592 (+)
G678928 NA non-coding downstream 124324 1428052 ~ 1428339 (+)
G678868 NA non-coding downstream 126145 1429873 ~ 1430967 (+)
G678929 NA non-coding downstream 127777 1431505 ~ 1431741 (+)
G678869 NA non-coding downstream 128237 1431965 ~ 1432863 (+)
G678637 NA other upstream 133028 1149551 ~ 1155672 (+)
G678751 NA other upstream 222609 1059843 ~ 1066091 (+)
G678440 NA other upstream 1137048 147934 ~ 151652 (+)
G678946 NA other downstream 214625 1518353 ~ 1612547 (+)
G679076 NA other downstream 491442 1795170 ~ 1799433 (+)
G679324 NA other downstream 1085139 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1386034 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 2249549 3569165 ~ 3573135 (+)

Expression


Co-expression Network