G1192479


Basic Information

Item Value
gene id G1192479
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59983524 ~ 59986204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1360419
AAGACAACCATCAATATGTTAGTTCTATCATCAAGACAACCGTCAATATGTTAATTATATCGTCAAGACAACCGTCAATATGTTAGTTCTATCGTCAAGACAACCGTCAATATGTTAGTTCGATCATCAAGACAACCGTCAATATGTTAGTTCTATCGTCAAGACAACCATCAATATGTTAGTTCTATCATCAAGACAACCGTCAATATGTTAGTTCAATCATCAAGACAACCATCAATATGTTATATCGTCAAGACAACCATCAATATGTTAGTTATATCGTCAAGACAACCATCAATATGTTCTATTATCAAGACAATCAGCCCAAGTGGTGGTCTCAGTAACACTGTGTAGCCTCGCCTATTCATTCTCAGAACATCTATTGAGAGAAGCTAGATGAGTACACTGCCTCTATTCCCTAATGACACAAACCTGTACAGATCCTTTTAAAACACTGATTCATCAGTACGAAATGAGGATGGTCCAATCAAATCAATGCCAGTAATAAATCCTCACCACCGCAAGAGAGGGTTTCCCAGATCACAGAGCAGTTTCCTCATTTTTCAGGAACattgaggaaagagaggaaaggatgGAAAACCGGTCttggtgtgtgtttgcgtgtgtgtgtgtttgcttgcgtatgtgttggtgtttgtgtgtgtgtgtgcgtttgtgtgtgtgtgtgtctgtcgtgCTGCAGTAGTCCCAGTCTCCTCCAGTGGTCAGTCACAACAGGGTATTCCACGAGAGATGAGAAAAATGGTGAGGGGGGAGTGGGAAATGTTTGAATGGTAATAGTAATGTGAGGGAAGGAGGGTTGTCTCCCCCTGagatagctgtctgtctgtcagggtcgagggaggagagggagaggaggagagagagggaggagagggagaggaggaaagagagggagggagacgcggagagagagggaagagaggagagagaggagagagaggagggagaggagggagaggaggagagggagaggaggagagagagggaagagagaggagaggagtagagggagaggaggagagagagggaggagagggagaggaggagagagagggaggagagggagaggaggaaagagaggagagagaggaggaaagagaggagagagaggaggagagagagagaggaggaaagagagggagggagatgcggagagagagaggagagagaggaggagagagggggaggagagggagagggagaggaggagagagagggaggagagagagggaggagagggagaggaggagagagagggagagagagggagagggaaattcTCAGAAGAGCAGATGGAAACGGGTAACCCACAAGTGAGAGCCTTTTTCCATGCTCCAGCTCTCTCAAGGCACTGAAAAGGGGACGGGAGGGGTCCCTCAGAGTGGAGTGTCACCAAGTCAAAGTGTCCCTCGGTGGAATGTCCCCCCAGCAGTAATGTCCTTCATTTATCCCATCCTGTcccctgctcgctctctctctttctctctctgtgagagaGGAGCTGAGGTCCTACGACTGCAGAAAAACTGACAGAGGTCAATGCTCATAGTCACACTACAGTGTGTCAGGTGTGCAGTGCAGTCACTCACTCAGCTCTCTCCACTCAgctctctccactccactctcaGAATGGCTGCATGGAGAAAAACATGCCTTTATGTCCCTTTTTCACTGCGAGGATTAATACCGGTGCTGGACCTGAAAACTCAGACTTTTGTGTTACCAATGGCTGAGGCAGAGACATGGTTTCCTTTGGGCCTTTATAACTCCATGTGGAATATTCTCCTCCTTGGTCTGTATTCCACAGTCTAGAATAGTAGTCTTTTCTGTGCCTCAGAAAGGCACAAAGGCACAGACAATGACCTACTACTGTAATACTGAAGGGGCTGGTCACTCTGTtctagtgtaatagtgtagatgTGTGATTTCTTTGTTCCATACATTAGTTATTGTGTTCTTACACTGGAAAAAGTCCACAGGTTCTGTACATACTCtttcggcccagtagaatgtctttcttgcacacacacacatacacacacttacacaaatacacacaaataaacacatcattttcctgccctctcctgctcctctcctcgtCCCTCTACCACCAGCTGGCAGTAAGATCCTGGCGGACTCAGGTTCCACTCTCCTGTTGCGTAAAAAAAGCCCCAACACATTGCTGCAGTGTCACAGGACGAGTGAATGACGCGGGGCACTGACGCGGGTGCACTCCTCTTTCGGCCCGGTGTCGAGTTGCCGTCGCTGGCCCACTTTTCACCGGTCGGTCGGCTTGTCACCTGTCCTGGCTGGGAGGAATGTCGTGACTGACGCGGCCGGTGACGGCAGCACTGACTCCGGCAGCAGCTCGGCATAGCGGATTAAGTGTCTGTGAGGCTCCCGCTgcgtgtgtcaatgtgtgtgagGGGgtctcagggtgtgtgtgtgcatgtctcctGAGAGGTTGTTTTGACACTGGACACCTGCTGTCCGACTGTAAAAGCGCGTGTGTGTGAGGAGGTGGTGAACCCGCATGCCAGACCCatccgtctctccctctgtctctctctcctcagagttCCACAGGTACTTCCtccgcccgtct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1360419 True 2632 lncRNA 0.50 2 59983524 59986204

Neighbor

gene id symbol gene type direction distance location
LOC110516349 cfap70 coding downstream 25318 59938111 ~ 59958206 (-)
LOC110512532 LOC106606500 coding downstream 51195 59921477 ~ 59932329 (-)
LOC110515614 LOC105008474 coding downstream 71456 59651360 ~ 59912068 (-)
LOC110487009 LOC106601835 coding downstream 334610 59644584 ~ 59648914 (-)
LOC118938337 LOC105021644 coding downstream 440405 59523790 ~ 59543119 (-)
LOC118938340 NA coding upstream 206708 60192912 ~ 60196843 (-)
LOC110486988 LOC106606456 coding upstream 274516 60260720 ~ 60262829 (-)
LOC110486987 cyp2k4 coding upstream 288521 60274725 ~ 60367022 (-)
LOC118936527 LOC106606405 coding upstream 391649 60377853 ~ 60386961 (-)
LOC110486979 LOC106606406 coding upstream 417413 60403617 ~ 60408720 (-)
G1192480 LOC106601842 non-coding downstream 393 59982334 ~ 59983131 (-)
G1192473 NA non-coding downstream 13202 59969263 ~ 59970322 (-)
G1192471 NA non-coding downstream 18650 59964008 ~ 59964874 (-)
G1192470 NA non-coding downstream 19953 59963293 ~ 59963571 (-)
G1192469 NA non-coding downstream 20440 59962880 ~ 59963084 (-)
G1192478 NA non-coding upstream 538 59986742 ~ 59987826 (-)
G1192477 NA non-coding upstream 1805 59988009 ~ 59990082 (-)
G1192574 LOC106595676 non-coding upstream 123269 60109473 ~ 60111076 (-)
G1192575 NA non-coding upstream 125148 60111352 ~ 60112273 (-)
G1192532 NA non-coding upstream 143533 60129737 ~ 60132110 (-)
LOC110516720 adcy9 other downstream 513233 59382826 ~ 59472065 (-)
LOC110485268 LOC106601889 other downstream 669241 59289251 ~ 59380900 (-)
G1192205 NA other downstream 707675 59275141 ~ 59275849 (-)
G1192158 NA other downstream 862368 59119541 ~ 59121156 (-)
G1192082 NA other downstream 1074292 58906153 ~ 58909232 (-)
G1192519 NA other upstream 219578 60205782 ~ 60208270 (-)
G1192535 NA other upstream 232962 60219166 ~ 60314554 (-)
LOC110486976 LOC106606471 other upstream 571578 60460043 ~ 60565934 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 misc NC_053126.1 CM020923.1 13769019 ~ 13781685 (+)