G1192477


Basic Information

Item Value
gene id G1192477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59988009 ~ 59990082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1360411
AACAATTCAAATTAAAATATACAcgttcagacagacagagtataAATATACAAATAGATAGTTGTATTCACCACAGAATAATGGGCAGAGAGACATACATTTTCTGTCACTAGTGACAAATAAACAGCATTGGTTTCAGCAGACAGACATGGCTGTCCACTATTTGTTAAAGACATCCCTCACCCGGAGTAGAGGTAGAtgtccctctttttctctcttctcttttgcAGCATAATCATCATTCCATCTTTACATCACCTCATACCAGGgacgtgttcattaggcaccgaaCGGAAGAAAACAGACCGAAGTAGTGTGGAAGTGCCTGAACTTATCCAATGAGAAACAGTTAGTTTTCATATTCCGTTGTAAAATCTTTTGCTactgtgtgccctaatgaatacgacctaAGTGCTATTCAAGTATCACATCAAGTACTACTACGTACTGTATATATGATTACATAACAAGATTTTCTCCTCAGAAGCAAGCACACAGCTGAACTCACAAagctaaatacacacacagtacatgcaTGGTGTTCAGAGACCTACATGTCGGACTGTGCGTatccgtgtgtgtgcgcgcatgtgggtgtccgtgtgtgtccatgtctgtgtttcagtgtgtccgtgtatgtgtgtgtggttagaaTGACAGCCGAACTGCTTGTGACTGTATTCCCTGCACGTAGCACTTTGCGGTCCAGTTCTCTCAATGAAATTGCACAactctcctcagagagagagagagagggagggagagatggaaagagagagatggctaCAATGTAAACATCAGAACCACCTGgggccttgtctctctctctcttctaaggGATTCTCAGAGCGCTGCCTACAAATCATCTCTTTTATAAATATCCCACCCTGCTTCTTTTGATATTCAGACTTGGCTTCCTTTCAATTTAAAACGATGTTATGTGACTATTTGTGGCAAATACGTCACCAGAGACTCATGAAATAAATATGTTCCTCTGTCTTCTTTAATCGTGTTCTTTAATCGTGTTCAACTAGTGCAAGAGAAATAAAAGGAAATTCAACAGGGACGCCCTCTTAATCAGAACAAGTCCAGTTTTACTATGACTTCTGCAGGGCATGGCTGGATGAACCAAGTCTCTGGCCAgggaaaggaacattttaaagctCGCCTCTTGACATCAGAtaattttttttgcagttttcaagcacatttcctgcaattctacacattttgtcatgaggcaGATACAACTTTGCCGTTTTAaatgcccagtgcagtcaaacatTATatttacagtgaggagaacaagtatttgattcaCTGCCGAGTTTTcagattttcctacttacaatttgtatcataggtacacttcaactgtgagagacagaatctaaaacaaaaatccagaaaaccacattgtatgatttttaagtaattcatttgtattttatttatgatAATGCTGTAAGAGCTGTTCGAAAAGTCCTCCTAAAATGTCAATATGTTTTGATCGGATGGAGTTTTGTTCTGCCTAgcagtaaatgagttaatagaccaataagaaagagagttccaaacctctctgccaataacagctagttttcagttttccccttccCAGGTGTCTGCAGACCCCACTCTGAGAACCCCTGCTCTAGCGTTTCTAGCCCAGGACTAAGAGCGTCTGGGGTTAAGTATACACTTGGGATAACCACATGTGAAAAGGCCTTTTGAAGCTAGCCTGCTGGTAGCAGGCCTGTTTGAGCTTCAGCCTGACTCCTTGGTCATGTCCGTTGTCATGCCAAACTCCACTAACAATGTATGGCACAACGTGACGACGCAAGTCAGTAGAGCTGGCTGTAAAGCACAGAGAATTATATACACATCCCACTGTGGCCACACTGGTTGTATCaatgctgttcattgaaatgacgttgaaccaacgCTGAATAGACGTTAAAttaacgtctgtgcccagtgagaGTACTGGAGAATTCAGCTACTTCAGCCAGTAAAGCCACTTGTTATTCTGTCCAGTAACAAAAAGGACAAGAAGGCAGCATTCCTATTCTGT
>TU1360412
AACAATTCAAATTAAAATATACAcgttcagacagacagagtataAATATACAAATAGATAGTTGTATTCACCACAGAATAATGGGCAGAGAGACATACATTTTCTGTCACTAGTGACAAATAAACAGCATTGGTTTCAGCAGACAGACATGGCTGTCCACTATTTGTTAAAGACATCCCTCACCCGGAGTAGAGGTAGAtgtccctctttttctctcttctcttttgcAGCATAATCATCATTCCATCTTTACATCACCTCATACCAGGgacgtgttcattaggcaccgaaCGGAAGAAAACAGACCGAAGTAGTGTGGAAGTGCCTGAACTTATCCAATGAGAAACAGTTAGTTTTCATATTCCGTTGTAAAATCTTTTGCTactgtgtgccctaatgaatacgacctaAGTGCTATTCAAGTATCACATCAAGTACTACTACGTACTGTATATATGATTACATAACAAGATTTTCTCCTCAGAAGCAAGCACACAGCTGAACTCACAAagctaaatacacacacagtacatgcaTGGTGTTCAGAGACCTACATGTCGGACTGTGCGTatccgtgtgtgtgcgcgcatgtgggtgtccgtgtgtgtccatgtctgtgtttcagtgtgtccgtgtatgtgtgtgtggttagaaTGACAGCCGAACTGCTTGTGACTGTATTCCCTGCACGTAGCACTTTGCGGTCCAGTTCTCTCAATGAAATTGCACAactctcctcagagagagagagagagggagggagagatggaaagagagagatggctaCAATGTAAACATCAGAACCACCTGgggccttgtctctctctctcttctaaggGATTCTCAGAGCGCTGCCTACAAATCATCTCTTTTATAAATATCCCACCCTGCTTCTTTTGATATTCAGACTTGGCTTCCTTTCAATTTAAAACGATGTTATGTGACTATTTGTGGCAAATACGTCACCAGAGACTCATGAAATAAATATGTTCCTCTGTCTTCTTTAATCGTGTTCTTTAATCGTGTTCAACTAGTGCAAGAGAAATAAAAGGAAATTCAACAGGGACGCCCTCTTAATCAGAACAAGTCCAGTTTTACTATGACTTCTGCAGGGCATGGCTGGATGAACCAAGTCTCTGGCCAgggaaaggaacattttaaagctCGCCTCTTGACATCAGAtaattttttttgcagttttcaagcacatttcctgcaattctacacattttgtcatgaggcaGATACAACTTTGCCGTTTTAaatgcccagtgcagtcaaacatTATatttacagtgaggagaacaagtatttgattcaCTGCCGAGTTTTcagattttcctacttacaatttgtatcataggtacacttcaactgtgagagacagaatctaaaacaaaaatccagaaaaccacattgtatgatttttaagtaattcatttgtattttatttatgatAATGCTGTAAGAGCTGTTCGAAAAGTCCTCCTAAAATGTCAATATGTTTTGATCGGATGGAGTTTTGTTCTGCCTAgcagtaaatgagttaatagaccaataagaaagagagttccaaacctctctgccaataacagctagttttcagttttccccttccCAGGTGTCTGCAGACCCCACTCTGAGAACCCCTGCTCTAGCGTTTCTAGCCCAGGACTAAGAGCGTCTGGGGTTAAGTATACACTTGGGATAACCACATGTGAAAAGGCCTTTTGAAGCTAGCCTGCTGGTAGCAGGCCTGTTTGAGCTTCAGCCTGACTCCTTGGTCATGTCCGTTGTCATGCCAAACTCCACTAACAATGTATGGCACAACGTGACGACGCAAGTCAGTAGAGCTGGCTGTAAAGCACAGAGAATTATATACACATCCCACTGTGGCCACACTGGTTGTATCaatgctgttcattgaaatgacgttgaaccaacgCTGAATAGACGTTAAAttaacgtctgtgcccagtgagaGTACTGGAGAATTCAGCTACTTCAGCCAGTAAAGCCACTTGT
>TU1360413
AACAATTCAAATTAAAATATACAcgttcagacagacagagtataAATATACAAATAGATAGTTGTATTCACCACAGAATAATGGGCAGAGAGACATACATTTTCTGTCACTAGTGACAAATAAACAGCATTGGTTTCAGCAGACAGACATGGCTGTCCACTATTTGTTAAAGACATCCCTCACCCGGAGTAGAGGTAGAtgtccctctttttctctcttctcttttgcAGCATAATCATCATTCCATCTTTACATCACCTCATACCAGGgacgtgttcattaggcaccgaaCGGAAGAAAACAGACCGAAGTAGTGTGGAAGTGCCTGAACTTATCCAATGAGAAACAGTTAGTTTTCATATTCCGTTGTAAAATCTTTTGCTactgtgtgccctaatgaatacgacctaAGTGCTATTCAAGTATCACATCAAGTACTACTACGTACTGTATATATGATTACATAACAAGATTTTCTCCTCAGAAGCAAGCACACAGCTGAACTCACAAagctaaatacacacacagtacatgcaTGGTGTTCAGAGACCTACATGTCGGACTGTGCGTatccgtgtgtgt

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1360411 False 2074 lncRNA 0.41 1 59988009 59990082
TU1360412 False 2025 lncRNA 0.41 1 59988058 59990082
TU1360413 True 582 lncRNA 0.39 1 59989501 59990082

Neighbor

gene id symbol gene type direction distance location
LOC110516349 cfap70 coding downstream 29803 59938111 ~ 59958206 (-)
LOC110512532 LOC106606500 coding downstream 55680 59921477 ~ 59932329 (-)
LOC110515614 LOC105008474 coding downstream 75941 59651360 ~ 59912068 (-)
LOC110487009 LOC106601835 coding downstream 339095 59644584 ~ 59648914 (-)
LOC118938337 LOC105021644 coding downstream 444890 59523790 ~ 59543119 (-)
LOC118938340 NA coding upstream 202830 60192912 ~ 60196843 (-)
LOC110486988 LOC106606456 coding upstream 270638 60260720 ~ 60262829 (-)
LOC110486987 cyp2k4 coding upstream 284643 60274725 ~ 60367022 (-)
LOC118936527 LOC106606405 coding upstream 387771 60377853 ~ 60386961 (-)
LOC110486979 LOC106606406 coding upstream 413535 60403617 ~ 60408720 (-)
G1192478 NA non-coding downstream 183 59986742 ~ 59987826 (-)
G1192479 NA non-coding downstream 1805 59983524 ~ 59986204 (-)
G1192480 LOC106601842 non-coding downstream 4878 59982334 ~ 59983131 (-)
G1192473 NA non-coding downstream 17687 59969263 ~ 59970322 (-)
G1192471 NA non-coding downstream 23135 59964008 ~ 59964874 (-)
G1192574 LOC106595676 non-coding upstream 119391 60109473 ~ 60111076 (-)
G1192575 NA non-coding upstream 121270 60111352 ~ 60112273 (-)
G1192532 NA non-coding upstream 139655 60129737 ~ 60132110 (-)
G1192606 NA non-coding upstream 192561 60182643 ~ 60244397 (-)
G1192619 NA non-coding upstream 218685 60208767 ~ 60298903 (-)
LOC110516720 adcy9 other downstream 517718 59382826 ~ 59472065 (-)
LOC110485268 LOC106601889 other downstream 673726 59289251 ~ 59380900 (-)
G1192205 NA other downstream 712160 59275141 ~ 59275849 (-)
G1192158 NA other downstream 866853 59119541 ~ 59121156 (-)
G1192082 NA other downstream 1078777 58906153 ~ 58909232 (-)
G1192519 NA other upstream 215700 60205782 ~ 60208270 (-)
G1192535 NA other upstream 229084 60219166 ~ 60314554 (-)
LOC110486976 LOC106606471 other upstream 567700 60460043 ~ 60565934 (-)

Expression


Co-expression Network