G1647589


Basic Information

Item Value
gene id G1647589
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63552841 ~ 63556107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885216
atgataacatggctctatacacagagtaccagtactgagtcaatgataacatggctgtatacacagagtaccagtactgagtcaatgataacttggctctatacacagagtaccagtactgagtcaatgataacatggctctatacacagagtaccagtactgagtcaatgataacatggctctatacacagagtaccagtactgagtcaatgataacatggctctatacacagagtactagtactg
>TU1885215
gtactgagtcaatgataacatggctgtatacacagagtaccagtactgagtcaatgataacatggctctatacacagagtaccagtactgagtcaatgataacatggctgtatacacagagtaccagtactgagtcaatgataacttggctctatacacagagtaccagtactgagtcaatgataacatggctctatacacagagtaccagtactgagtcaatgataacatggctctatacacagagtaccagtactgagtcaatgataacatggctctatacacagagtactagtactg

Function

NR:

description
PREDICTED: transcription factor 20 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885216 False 247 lncRNA 0.40 2 63552841 63556107
TU1885215 True 300 lncRNA 0.40 2 63553082 63556107

Neighbor

gene id symbol gene type direction distance location
LOC110498294 LOC106599381 coding upstream 18138 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 52669 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 138259 63380908 ~ 63414582 (+)
rtf1 rtf1 coding upstream 180506 63348949 ~ 63372335 (+)
LOC110498286 NA coding upstream 206549 63339785 ~ 63346292 (+)
plek2 plek2 coding downstream 1696 63557803 ~ 63565484 (+)
LOC110514319 rbm25 coding downstream 92262 63648369 ~ 63719010 (+)
ccdc177 LOC106586969 coding downstream 637402 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 646113 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 659179 64215286 ~ 64220569 (+)
G1647573 NA non-coding upstream 13776 63538473 ~ 63539065 (+)
G1647558 NA non-coding upstream 50703 63501876 ~ 63502138 (+)
G1647543 NA non-coding upstream 51641 63500950 ~ 63501200 (+)
G1647542 NA non-coding upstream 51975 63500422 ~ 63500866 (+)
G1647554 NA non-coding upstream 67064 63484960 ~ 63485777 (+)
G1647592 NA non-coding downstream 10886 63566993 ~ 63567963 (+)
G1647593 NA non-coding downstream 12620 63568727 ~ 63570341 (+)
G1647594 NA non-coding downstream 15114 63571221 ~ 63571915 (+)
G1647583 NA non-coding downstream 28913 63585020 ~ 63587772 (+)
G1647604 NA non-coding downstream 36295 63592402 ~ 63593498 (+)
G1647477 NA other upstream 348784 63202756 ~ 63204057 (+)
G1647411 NA other upstream 475698 63075149 ~ 63077143 (+)
G1647342 NA other upstream 534153 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1059122 62486921 ~ 62493719 (+)
G1648296 NA other downstream 572101 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1424257 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1905666 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1988270 65544377 ~ 65545055 (+)
G1649309 NA other downstream 2022332 65578439 ~ 65582582 (+)

Expression


Co-expression Network