G1647592


Basic Information

Item Value
gene id G1647592
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63566993 ~ 63567963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885220
GCTTGTTTGAAAGGATTTACAGTCCTGTGATGTCGAGAGCTACAGTAGACGACGATATGTTGACCTAACAGCTAACACAGACTAGCGCAGATGCCATGCAGTAAGTTAGTATAATTTTATAGGTGTTTTACAGAAGCAATGAGCTGGGCACCCTGCTGTATTACGGGCACATATTAAAGACATTGCTTTTGTTTTGGTAATTGCTTCTCTGGAAACCTGCAACGTCATGAACTATAAGGAACATTTTTAATGTTTTGATGCACGTTCATCTCACGTTGTATCTCGACAGACGCAGTCACAAATGCAGCATTTCATATTTCATCACCTAATCTAAAAAATATTGTTGTTACCAAGGGCAAcgtagtatagtgtgtatatatatatacagtccatCAAATGGTTTGcttaaggaaatcaatcaatcaatcaatcaatcattaacATGGATTACATTCAGTAACTGTAGTCAAAATCAACCAGTCACAACCATAAACAGCTAATCTAGAGTGAAGGCACTTCACTTTGCGCAATTATTAAGGAGCAGGTGTTATTGGTCGCAATCAAAAAAGTGCCGAACATTCACATTTCACAAGGATCAAGATATCACCAAAATGCTCCACCCTCTACGACGCTAATACCCTGGCCCGCCTATCTTCACAATACCTTGTCTGACTAAACTGTGGCGAAATGGCCGTCtcaaatgacacactattcccaatatagtcTAGGGTGTAATTTTGGggaccccccccctcctcccccgggTCTGTTCCTGGTGTTATGCTACCTTAGTGAGCCGTAGGTCTCCAAAGACTCGCAGGGCGGTGAGAGAGGCCAGCGGAGACAGACGATGGGTGAAGCCACACAGGGGCTGGCCATCCACCAGGATACGGAACTGTTGGTGttcacatactatctcca

Function

NR:

description
PREDICTED: galectin-related protein B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885220 True 921 lncRNA 0.43 2 63566993 63567963

Neighbor

gene id symbol gene type direction distance location
plek2 plek2 coding upstream 1509 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 32290 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 66821 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 152411 63380908 ~ 63414582 (+)
rtf1 rtf1 coding upstream 194658 63348949 ~ 63372335 (+)
LOC110514319 rbm25 coding downstream 80406 63648369 ~ 63719010 (+)
ccdc177 LOC106586969 coding downstream 625546 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 634257 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 647323 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 913464 64481427 ~ 64482263 (+)
G1647589 NA non-coding upstream 10886 63552841 ~ 63556107 (+)
G1647573 NA non-coding upstream 27928 63538473 ~ 63539065 (+)
G1647558 NA non-coding upstream 64855 63501876 ~ 63502138 (+)
G1647543 NA non-coding upstream 65793 63500950 ~ 63501200 (+)
G1647542 NA non-coding upstream 66127 63500422 ~ 63500866 (+)
G1647593 NA non-coding downstream 764 63568727 ~ 63570341 (+)
G1647594 NA non-coding downstream 3258 63571221 ~ 63571915 (+)
G1647583 NA non-coding downstream 17057 63585020 ~ 63587772 (+)
G1647604 NA non-coding downstream 24439 63592402 ~ 63593498 (+)
G1647611 NA non-coding downstream 47267 63615230 ~ 63615645 (+)
G1647477 NA other upstream 362936 63202756 ~ 63204057 (+)
G1647411 NA other upstream 489850 63075149 ~ 63077143 (+)
G1647342 NA other upstream 548305 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1073274 62486921 ~ 62493719 (+)
G1648296 NA other downstream 560245 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1412401 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1893810 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1976414 65544377 ~ 65545055 (+)
G1649309 NA other downstream 2010476 65578439 ~ 65582582 (+)

Expression


Co-expression Network