XLOC_035925


Basic Information

Item Value
gene id XLOC_035925
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44275846 ~ 44308036 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072260
TCTAACATTGAGCTAACACCAATATGAACACCATGACTGACTCATTGAAGAAACTTAGGAGGGATTTTTAGAGGAAGTGATGAAAAAGTGAGAGACTGATCAAACATTAGCCTGATTTGTATCAAGGGGGCTTACACTTGATGGCTCAATCTGAAAGAGGTGTTTGATTGCAGGTGGCCCCAGATGAGTTGTGACTGAAAATGTGAGATAGAAAGGCGAAGGAAAAAGTGCCCCTGCTGCAGGGCAGATGGGAGTGTTGCCATTATTCCAGATTCTTCAGTAATGACTCTTACAACTGATAATTGCAAAGGACCACTTTTTCCAAAAGACTCACAGATGAAGAAGTGGCGGTTTAGTGTGGCCGTGAGGATTTGGCTTTGAAGAGCGGGAGAAGAACAGAGCGGAGAATCATGACCATTCAATCTTTATCATCAGTAGCCTTGGCAGCTTCTACTTTCCCTttcatgttttgtgtttatttctgcGACTAGCATCCACCGCCCTCACCGTTTCATACTCAGTCATTTCTACAGTTATCCTTTATAcccacacacgcacgcacagacacccacacaaacacacactcacacacatgaacTTTATCTCTTCCAaagcacagcagcagcagcagctcgcTGGGCTCCATCTTGGTGGAAATCAGAAAGTGTGAGATAATTCTGTAACTAATAAAGAGAAGGGAGGCCCTTTGATGGCTCAGACTGAAAAgatatttcatgttttttgtgtgtgaggGATTGGAGAGATGTGTGATTGTATGGAGGCTGCGCGCTCCCCTGCTGTTCTTCTCTGCCTAGAAGCTGGCCCCCCTCTGGCTAATGTTATGGAGAAAGGAAGGCATTTTAGGGCTGCCTCCCCCCATTCTCTCAGCcccccttttttcttttgttcCCCTTTGAAGAATgactttagacattttatttacatatttaaccaTGGATGAAAGAAAAGAGGGTTGCGAGAAAGAAAGCTCCCCGGGCTCTAGTGGGAATTTTGATAAGTTTAAATGAATGGAAAtcttattagcttttttttttagacgAGTCAAAGCTTATGTTTCTGGTGACGTTTTACATTCTGACAACAGGAGAGTCCTACATGTGAGATGAGGTGGACACGAAGGTCGTCTTCATCCTCTTCGACAAAACTCCTTTTTCCTTACTGATCTTCCTGAAGTTGTCAACTGGCAAGTCAAAGTGAATCCCTGCGCACTTCAAACTGTGCTTTGAGGGAAAAAGTGCAAGTATCAGCTTGAATTCGCATgagcttatttttttatattgcagTATGTGTGTGGTTTTAAGAGCCGGAGCTGCGGGTAGATTTGGGGCCTGAAGGCCGTGTTGGTTACAGATACAGGAGGACCATGGCCTTAATCTGCTTATCATGTCTCTGTTCTCCTCTCAAACTGTTTTGTACTCTGAAATAGGTCACATATACATGTGCATCGTGTTATCAAGTGTATCTGAATCAAAAGGATTTGGTTTTTACCAAAGATGTTCCATGTTTGTCTTACTttggaaaaaaatactttattggcatgctttttaaaataaagtaagtaAACACAGCAATGTACTATTGTTTTAATCATGAATAAAAACCTATTAACACGTTAAATCtaaaattttattgtatttacttaccggccactttattaggtacacctgtccaactgctggttattgcaaatttctaatcagccaatcacatggagcAGCAACATTGTCAAGATGATCTGCCGCAGTTAAAATCCAGCATCAGAATAGGCAAGAAAGGtgttttaaatgactttgaacaaAACATGGGGTTGGTGtcagactggtctgagtatttcagaaattgctgtgctactgggat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072260 True 1878 lncRNA 0.42 3 44275846 44308036

Neighbor

gene id symbol gene type direction distance location
XLOC_035924 AL808129.2 coding upstream 422000 43852743 ~ 43853846 (+)
XLOC_035923 NA coding upstream 904564 43366458 ~ 43371282 (+)
XLOC_035922 rflna coding upstream 912256 43340995 ~ 43363590 (+)
XLOC_035921 NA coding upstream 1121409 43149742 ~ 43154437 (+)
XLOC_035920 si:dkey-65l23.2 coding upstream 1192153 43078044 ~ 43083693 (+)
XLOC_035926 CU914776.2 coding downstream 50407 44358443 ~ 44382240 (+)
XLOC_035927 si:dkey-56i24.1 coding downstream 112072 44420108 ~ 44421418 (+)
XLOC_035928 mhc1laa coding downstream 134184 44442220 ~ 44448423 (+)
XLOC_035929 si:ch73-211l2.3 coding downstream 167757 44475793 ~ 44480456 (+)
XLOC_035930 si:dkey-220o5.5 coding downstream 241254 44549290 ~ 44561585 (+)
XLOC_035916 NA non-coding upstream 1368022 42764234 ~ 42907824 (+)
XLOC_035913 NA non-coding upstream 2216231 42052372 ~ 42059615 (+)
XLOC_035912 BX469918.1 non-coding upstream 2287733 41987350 ~ 41988113 (+)
XLOC_035933 CR931937.1 non-coding downstream 351777 44659813 ~ 44659927 (+)
XLOC_035936 NA non-coding downstream 436797 44744833 ~ 44746973 (+)
XLOC_035938 NA non-coding downstream 569939 44877975 ~ 44880401 (+)
XLOC_035941 NA non-coding downstream 846852 45154888 ~ 45156167 (+)
XLOC_035943 NA non-coding downstream 915440 45223476 ~ 45224276 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G227053 NA non-coding CI01000053 null 3734124 ~ 3745623 (-)
rainbow trout (Oncorhynchus mykiss) G488697 NA non-coding NC_048570.1 CM023224.2 24921185 ~ 24921431 (-)