G2078423 (rab38)


Basic Information

Item Value
gene id G2078423
gene name rab38
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36100364 ~ 36100648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376350
CACCTTGGCAGAGGTCTCGTACCATCCCACAAAGCCATTCTCCTGACAGAACTTCTCCATCTGGATCCCGTTGTTGGTTAGCACGTCCCGCCCCTGGTCGCACTTATTAGCCAATAGCACAGCGGCCACATTTTTCCCATTGGCCAGTGTAAGTTTAGAGTCCAGGTCCTCCTTCCACTTGGTGACAGCCTCGAAGGAGGAAGGCCGCGTCATGTCAAAAACAATGAACGCCCCCATGGCTTCACGGTAGTAGACCCTCGTCATGTTCCCAAATCGCtcctgacc

Function

symbol description
rab38 Enables several functions, including AP-1 adaptor complex binding activity; AP-3 adaptor complex binding activity; and BLOC-2 complex binding activity. Involved in several processes, including endosome to melanosome transport; melanosome assembly; and phagosome acidification. Located in several cellular components, including cytoplasmic vesicle; lysosome; and mitochondria-associated endoplasmic reticulum membrane.

NR:

description
ras-related protein Rab-38-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376350 True 285 lncRNA 0.54 1 36100364 36100648

Neighbor

gene id symbol gene type direction distance location
LOC110507977 fzd4 coding upstream 88030 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 277480 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 581255 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 935905 35156006 ~ 35164459 (+)
gucy1a2 LOC106581392 coding upstream 989322 35014631 ~ 35111042 (+)
naalad2 LOC106581411 coding downstream 265007 36365655 ~ 36381011 (+)
LOC110508005 LOC106613226 coding downstream 337577 36438225 ~ 36440709 (+)
LOC110507218 LOC106591049 coding downstream 353113 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 510087 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 578125 36678773 ~ 36703523 (+)
G2078420 NA non-coding upstream 21843 36078246 ~ 36078521 (+)
G2078419 NA non-coding upstream 22671 36077473 ~ 36077693 (+)
G2078416 NA non-coding upstream 25674 36074005 ~ 36074690 (+)
G2078351 NA non-coding upstream 101973 35998053 ~ 35998391 (+)
G2078347 NA non-coding upstream 107901 35992169 ~ 35992463 (+)
G2078426 LOC106590903 non-coding downstream 5896 36106544 ~ 36106845 (+)
G2078427 NA non-coding downstream 6518 36107166 ~ 36107986 (+)
G2078428 NA non-coding downstream 7410 36108058 ~ 36108619 (+)
G2078429 NA non-coding downstream 8108 36108756 ~ 36109124 (+)
G2078432 NA non-coding downstream 11931 36112579 ~ 36113120 (+)
G2078382 NA other upstream 66365 36033285 ~ 36033999 (+)
G2078296 NA other upstream 167855 35932115 ~ 35932509 (+)
G2078253 NA other upstream 228631 35870485 ~ 35871733 (+)
G2078188 NA other upstream 302374 35797572 ~ 35797990 (+)
G2078087 NA other upstream 407531 35684135 ~ 35692833 (+)
G2078425 NA other downstream 2226 36102874 ~ 36104101 (+)
G2078493 NA other downstream 200290 36263506 ~ 36302664 (+)
LOC110536894 NA other downstream 1172838 37031161 ~ 37276857 (+)
G2079197 NA other downstream 1178457 37279105 ~ 37280832 (+)

Expression


Co-expression Network