G2078438


Basic Information

Item Value
gene id G2078438
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36119128 ~ 36119652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376365
caccataaatccagagaatgccagactttgatgacacaTTTTTATGACacaatttgcccacgaaggacccaccgcgccaccttcctgtccaagtgagcacagcacaacaaggtgagtcaaaaaaggtattgtatgctgctgcataaatgatgtaatatgcaagggatatatgtatactgtagctaagctgttagtagcccatgtgcctcaccctaatcatttggtctattttcacctcttaattttgcctactgttctgacttggtggtgcacatgtagcctataacttgtttttgagaaatgtaatcatagaatattgtaagagctttcattgtctgcttatatgcccccttcatttatcctacggttcttacttggtgtacagggagaacactgtaagaactcCCCATGTTATGAATTCTgttactgtacatttcaaaagtgctgaacaaatagttatattgactacgttcgttctagctcgctcattaatgtcttaatcaaaattacagattgcctcttatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376365 True 525 lncRNA 0.39 1 36119128 36119652

Neighbor

gene id symbol gene type direction distance location
LOC110507977 fzd4 coding upstream 106794 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 296244 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 600019 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 954669 35156006 ~ 35164459 (+)
gucy1a2 LOC106581392 coding upstream 1008086 35014631 ~ 35111042 (+)
naalad2 LOC106581411 coding downstream 246003 36365655 ~ 36381011 (+)
LOC110508005 LOC106613226 coding downstream 318573 36438225 ~ 36440709 (+)
LOC110507218 LOC106591049 coding downstream 334109 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 491083 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 559121 36678773 ~ 36703523 (+)
G2078436 NA non-coding upstream 2093 36116810 ~ 36117035 (+)
G2078435 NA non-coding upstream 3291 36114729 ~ 36115837 (+)
G2078434 NA non-coding upstream 4924 36113812 ~ 36114204 (+)
G2078433 NA non-coding upstream 5510 36113329 ~ 36113618 (+)
G2078432 NA non-coding upstream 6008 36112579 ~ 36113120 (+)
G2078440 NA non-coding downstream 1124 36120776 ~ 36121012 (+)
G2078442 NA non-coding downstream 17535 36137187 ~ 36137487 (+)
G2078424 LOC106581415 non-coding downstream 18011 36137663 ~ 36139822 (+)
G2078444 LOC106581415 non-coding downstream 22723 36142375 ~ 36151534 (+)
G2078447 NA non-coding downstream 33165 36152817 ~ 36153128 (+)
G2078425 NA other upstream 15027 36102874 ~ 36104101 (+)
G2078382 NA other upstream 85129 36033285 ~ 36033999 (+)
G2078296 NA other upstream 186619 35932115 ~ 35932509 (+)
G2078253 NA other upstream 247395 35870485 ~ 35871733 (+)
G2078188 NA other upstream 321138 35797572 ~ 35797990 (+)
G2078493 NA other downstream 181286 36263506 ~ 36302664 (+)
LOC110536894 NA other downstream 1153834 37031161 ~ 37276857 (+)
G2079197 NA other downstream 1159453 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 1247087 37366739 ~ 37368136 (+)

Expression


Co-expression Network