AMCG00002483 (gpd1l,LOC108434205,LOC103034694,LOC105023484)


Basic Information

Item Value
gene id AMCG00002483
gene name gpd1l,LOC108434205,LOC103034694,LOC105023484
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16736684 ~ 16750596 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002483
cagtGTGTCAACTTTGTGATGATGCCATTTATAGCGGTCTGGTATGGATGCGGGCATTGAAGTAACATTGCACAGTCCTCTATAGTACAAAGTCGAGATCTCCAGTTATTGTATATTaaactaatatataaatacctCGATCTTTCGCTTTGCATCGGTCCTTTCATGTTATCTACGATGACGGCACCTCTGAAAGTTTGCATTGTGGGATCGGGAAATTGGGGCTCTGCGATTGCCAGAATAATAGGCAACAATGTGAAGAAAGAACAGACGTTTGCCTCTACGGTGAAGATGTGGGTCTTTGAAGAGAATGTCAGTGGCAGGAAACTGACAGACATCATCAACACAGACCACGAGAATGTGAAGTACCTACCGGGATACAAGCTGCCCGAGAATGTGGTCGCCGTGCCCAAGCTCCAGGATGCTGCCAAGGATGCCGACCTCCTGGTCTTCGTGGTTCCTCACCAGTTCATCAGGAAGCTGTGTGACGAGATGGTGGGCTGTGTGGCTGAGAAAGCACGAGGCATCTCCCTGATAAAGGGTATAGATGAGGGGCCAGAGGGACTCAAACTGATCTCCGACATCATCCGAGAGAAAATGGACATCGATGTCAGTGTCTTAATGGGGGCCAACATTGCCAATGAGGTGGCTGCAGAGAAATTCTGTGAAACGACAATAGGAAgcaaaaacatggaaaatggCCTTTTGTTCAAAGAGCTTCTGCAGACGCCCAATTTCCGTATTACGGTGGTGGATGATGCAGATACTGTGGAGCTCTGCGGAGCCCTAAAGAACATCGTGGCGGTGGGCGCCGGGTTCTGCGACGGCCTGCTCTGCGGTGACAACACCAAGGCGGCCGTGATCCGACTGGGCCTGATGGAGATGATCACCTTCGCCAAGCTGTCCTGTAAGGACGGGGTGGTGGCCCCGGCGACCTTCCTGGAAAGCTGCGGCGTGGCTGACCTCATCACCACCTGCTACGGTGGCCGCAACCGCAGGGTCGCTGAGGCGTTCGCCAAGACCGGCAAGAGTATcgaggagctggagaaggagatGTTGAACGGGCAGAAGCTGCAGGGACCGCAGACCTCCGCTGAGGTCTACCACATTCTCAAACAGAAGGGCTTGGTGGACAAGTTTCCATTGTTCACGGCGGTCTACCAGATCTGTTATGAAGGGAAGCCGGTTCAAGACATGATTTCCTGTCTGCAGAGTCACCCAGAGCACATATGACCTGGGCCCTGGCACCCTGGCCTCCTTCCTGGCCTGTTCTCCCTGATAAGAACGGCCACTTTTTCAGGAGCAATTCCAATGTCACTGTGCTGGAGGAGATACAGTACAGCGGTCAGTTTTAGATAGGATGGTTCATCACCATAGTAGCAGAGGACAAATCTTAAACTGTCACATACAAAACAAGGTTAAATAATGCCTTTTGGTCAAAACTACCCCATGATTCTAACCATATCCGGTCCCTGTGCATTTGACAGTGTTTGTCTCCCCCCATCTTCAGTCAACACTACGTTGGAAATTGCATAACCGGTTTGGTTCCTGGAAAAGTACTGCTGTTTTATATCCTTGTGCTGAAGGATACAAAAGCAGGAAAAGAGATGCAGACGATTACAATCTGAAACGGGGAGGCGACAAACACATAAATGGCACACGTATGTTTAGGTATCAGAAACCTATTTTAGAAGTGAGATAGCTACATTCGTTTTTACTTTACTGAGTGCAGTAGTATTATGATTACCTCagggtttaaatacagtttgttttttgggtgTTTGAATCTATCTCTGATATTGTTATGCTTAATGTCAAATTCATAATGAAAATATGCCTGTGGAtatctctgttgttttttccatattttagTTCAAGTGAAACgcacaaggttttttttttaaatgacaaaccatttcacattattttgtttttatactatTTCCATAAAGTACACATACCTTTAGGtactttttaaagcagaaatctacactttttaaatatataaatatttatcttcaTTATAAAGCCATTAAACTAGAGGTGTTTTCTATTCTAGCTCAGAAGATGAACCGTTCCAATAAAGggaaagatttttttatatgtatactCTGGGAATATGATTTGGTTATTAGTTGCAGCTGTAGAATCATGTTGATCACAAAACTGTAAGCAGTCCCCCAATCCAACTACAATGCCTGAGAGGGAGACCAATTTTGATCAAATCCAAGCCGAAAAGCagaactttttcattttcaagacattttgtattttaattaagtgataACAACAGCACAGCTATGGAATACATCTTATATATCTAAAACAAGTCTTTATACATCGAAGTGGTCCAAACTGTTAAGGTGCTGTATATCTTGCCTGTAAAGCCCTAAAATCTATACAGGTTTTAGATTTTTAGTGCTGCCAGGTGTCACCTCTGCCTTCATCACTTCCTGCAGAGACGCCCCTCACTTCCTGAGATCGTCcattacagaaacattttcaaactgcaCTGCTTAAAATGTCTGTGgctctttaaaacaaaagaacatgaccaacatgctttaaaaaatgtacgCCAAGAAAGATTCATTTGCAGAGAAGAACTGTTCCTTACTATTTTTAGTACATCCACATTTGTTCAATTTATAATGAGTGCATCAGCTTGTTTTAGACATTGTGAAGCTCTAGTTGAAAGCACAAGCCTTATGCTTTCTATCGTTATCTTGGTTTAATATATTGGGAACATCAGCTCtcttttttgttctctttacCCACCAAGCTTGGCACGTCTTGCTTAAAATCCATCTAAAGTTGTCTGAACTCCATTCCCTCCGTAATTTGATTTTACAAAGACCTTCTCAAAGGACGCTTCAGATGAATTGAGATATTTAAAGCAAATTACTTTACCCAGCCAGAGAATATTATAAGTACTCTCTGTATGTAGCTCACTTTTAAGTTGCCTTTTACATTTCCTCAAATTGTTAATGAATGTAACACAAATTTAACCTTACAAAATTCTGTACCAGACAATTACGGTTTCTGATAACATAATCCTGTCTCTTGTTGATGTTTTATATGCTTGCTTCTTCattcaatgtttaatttctgaaaacatGTATCACTTCCTTTTTGGtagaaataaaactaatttctctGTTGCACTATTCATGTCTTAATG

Function

symbol description
gpd1l Predicted to enable NAD binding activity; glycerol-3-phosphate dehydrogenase [NAD+] activity; and protein homodimerization activity. Predicted to act upstream of or within carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be located in cytoplasm. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Brugada syndrome 2. Orthologous to human GPD1L (glycerol-3-phosphate dehydrogenase 1 like).

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase 1-like protein

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002483 True 3181 mRNA 0.42 8 16736684 16750596

Neighbor

gene id symbol gene type direction distance location
AMCG00002482 LOC102294068,LOC100692553,LOC101478849 coding upstream 85278 16621519 ~ 16651406 (+)
AMCG00002480 NA coding upstream 166257 16535647 ~ 16570427 (+)
AMCG00002479 NA coding upstream 277473 16343098 ~ 16459211 (+)
AMCG00002478 rbms3,LOC106588200,LOC107713827,LOC107600516,LOC107730162 coding upstream 399965 16270456 ~ 16336719 (+)
AMCG00002476 NA coding upstream 610862 16124380 ~ 16125822 (+)
AMCG00002484 NA coding downstream 3500 16754096 ~ 16769522 (+)
AMCG00002485 tmem42,LOC107394544,LOC103356608 coding downstream 19106 16769702 ~ 16774759 (+)
AMCG00002489 NA coding downstream 29232 16779828 ~ 16790437 (+)
AMCG00002498 exosc7,LOC107693297 coding downstream 62865 16813461 ~ 16819588 (+)
AMCG00002497 NA coding downstream 71103 16821699 ~ 16824223 (+)
G123526 NA non-coding upstream 81800 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 84720 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 246732 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 941535 15794408 ~ 15795149 (+)
G123386 NA non-coding upstream 1046721 15689601 ~ 15689963 (+)
G123568 NA non-coding downstream 41504 16792100 ~ 16792799 (+)
G123653 NA non-coding downstream 341379 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 386817 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 945264 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 1176103 17926699 ~ 17940633 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2375148 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3606987 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3665852 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3684713 13031759 ~ 13051971 (+)
G122746 NA other upstream 4596219 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 207565 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 225692 16976288 ~ 16985906 (+)
G123807 NA other downstream 1164840 17915436 ~ 17984730 (+)
G123989 NA other downstream 2081418 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2323097 19073693 ~ 19127947 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_01183747_01191853 GPD1L coding CI01000016 null 1183747 ~ 1192858 (+)