AMCG00010091 (LOC108435138,LOC105014579,LOC106585820)


Basic Information

Item Value
gene id AMCG00010091
gene name LOC108435138,LOC105014579,LOC106585820
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 13643088 ~ 13675666 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010091
GTGGAGTGGCTGAAAAATGAAGAGATAATTGACCCTTCTGATGACCGTAATTTCTACATCACCATCGACCACAACCTGATCATTAAGCAGGCCCGGCTATCGGATACGGCCAACTACACCTGTGTTGCCAAGAACATTGTTGCAAAGAGGAGGAGCACTACAGCCACGGTCATAGTCTATGTGAATGGAGGTTGGTCAACGTGGACTGAGTGGTCAGTTTGTAACAGCCGCTGTGGCCGAGGGTTTCAGAAGCGCACCCGTAGCTGCACCAACCCGGCCCCGCTTAACGGAGGAGCTTTCTGTGAGGGACAGGGTGTCCAGAAGCTCGCCTGCACCACAATGTGTCCAGTGGACGGGGCCTGGACAGAATGGAGCAAGTGGTCCACATGTGGGACAGAGTGCGCCCACTGGAGAAAGCGGGAGTGCAACTTGCCGGCGCCAAAAAACGGGGGCAAGGACTGCGAGGGCATGGTGCTGCAGTCTCAGAACTGCACAGATGGTTTGTGCATGCAGACTGCTCCAAGTACAGATGATGTTGCCCTCTATGTTGGCATTGTGATAGCTGTGATCATGTGCCTGGTGATTTCGGTGATCGTGGCACTCTTTGTGTACCGCAAGAACCACCGCGACTTCGACTCGGACATCATCGACTCTTCAGCTTTGAACGGCGGCTTCCAACCAGTCAATATCAAGACTGCTAGAACAGCTGACCTACTGACCGCCCCTCCTGACCTCACATCTGCGGCCGCTATGTACCGGGGCCCCGTCTACGCCCTGCACGACGTCTCAGACAAGATCCCCATGACCAACTCCCCTCTGCTTGACCCTCTGCCCAACCTGAAGATTAAGGTGTACAACTCTTCTGGCTTGGTCACTCCCCAGGAAGACCTCTCAGACTTCACCTCCAAGCTCTCTCCCAAGATCACCCACTCCCTGCTGGACAACGAGACCATGAACCTGCGAAACCAAAGCCTGGCCCGCCAGCGCGACCCGTCCTGCACGGCTTTCGGCTCTTTCAACTCCTTAGGAGGTCATCTCATCATCCCCAATTCAGgGGTAAGCTTGTTGGTGCCAGCAGGAGCAATTCCCCAGGGACGAGTTTATGAGATGTATGTGACAGTTCATAGAAAAGACAACATGAGGCCACCTGTGGAGGACATTCAGACAGTGCTGAGCCCTGTGGTGAGCTGCGGGCCCCCAGGAGCCCTGCTGACCAGACCTGTCATCATCACCATGCACCACTGTGCGGAGGCCAACACTGACGACTGGCAGATCCAGCTGAAGAACCAATCGCAGCAAGGGCAGTGGGAGGATGTTGTGGTCGTCGGAGAGGAAAATTTCACCACCCCCTGTTACATCCAAATGGACCTGGAAGCATGTCACATCCTGACAGAAACTCTCGGCACCTACTGCTTGGTTGGACAGTCCATCAGCAAAGCAGCTGCCAAACGACTAAAGCTGGCCATCTTTGGCCCCGTCACCTGCTCCGCGCTGGAATACCACATTCGGGTCTACTGTCTGGATGACACGCAGGATGCGCTCAAGGAGGTTCTGCAGATGGAGAAGCAGATGGGAGGAAAGCTATTGGACGAACCAAAGACTCTACACTTCAAGGACAGCACCCACAACCTCCGGCTGTCCATTCACGACATCCCACACTCCCTCTGGAAGAGCAAGCTGCTGGCCAAGTATCAGATCTGGAGTGGATCCCAGCGAAATCTGCACTGCACGTTCACCCTGGAGAGATTCACTCTGTCCACCACGGATCTGACCTGCAAACTGTGCGTCCGACAGGTAGAGGGTGAGGGGCAGATATTCCAGCTGAACAGCGCCTTGTCAGAGGACACCCAGAACATCGACACATCCTTAATGGACCCGGCCAGCAACATAACTACTCTTGTGGGACCAAACGCTTTCCGGATCCCCCTTTCGATTCGTCAGAAGCTGTGCGGAAGCCTGGACGCCCCTCAGACCAGAGGCAATGACTGGAGGATGCTGGCCCACAAGCTGAATTTGGACAGGTATCTAAACTACTTTGCCACAAAGTCAAGTCCAACCGGAGTCATACTGGATCTATGGGAAGCGCAGCACTTTCCTGATGGGAACTTGAGCCGGCTGGCGGCCGTCTTGGAGGAAATGGGCCGGCATGAGACGGTGGTTTCCTTGGTAACAGAACACTGACAGCGGTTGGGAAAGTTTGTACGCGAGAACCATGATGCGCTACAAGAAATACAGAAGCTACAAACTCATGGATCCCAACCAATGAtttttgttacaaaaacaaaaaagtctgaaaaatgtaaaggatTTTGAGTTTTACAGAAAGACCTTGTATATGATCTCATGAAATCAGAATCATGTGAAAGCATCGATTCATtgctaaaaactgaaaatactcTAGCCTGGGCTGTACATTCCTtggtacagttttttttttcttcttctttatacAGTTTCCTAGGAAACGCTTTATTCTGCTATCCATATATGTGGATGAACTTTCCTAATCCAGATTTCTAGTGTGTGTATGAGATTCTGTGTGGAGGGGTGTGAAGTAACAGAACCTGAGGTACAATCCGATGCCCCCCTTCTCTGCTCTGAATTAGATGGATTACCAAATATGGCATTTAAAATCATCTGCACATTATCCACCTGTTTCCTGTATTTTAGGTCTTCATTTGTAGCCTCCCCATACCTTGCATTTATGTCTTTTGGGTTTTAAATAATGATCACATT

Function

NR:

description
PREDICTED: netrin receptor UNC5C-like isoform X2

GO: NA

KEGG:

id description
K07521 UNC5; netrin receptor unc-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010091 True 2736 mRNA 0.51 12 13643088 13675666

Neighbor

gene id symbol gene type direction distance location
AMCG00010088 NA coding downstream 7688 13578716 ~ 13635400 (-)
AMCG00010076 NA coding downstream 1174406 12465333 ~ 12468682 (-)
AMCG00010069 NA coding downstream 1297744 12339260 ~ 12345344 (-)
AMCG00010070 LOC103390388 coding downstream 1362197 12208986 ~ 12280891 (-)
AMCG00010066 NA coding downstream 1435096 12161014 ~ 12207992 (-)
AMCG00010090 LOC105901120,LOC105014579,LOC107558977 coding upstream 27731 13703397 ~ 13712371 (-)
AMCG00010092 NA coding upstream 585073 14260739 ~ 14279927 (-)
AMCG00010097 zbtb7c,LOC106568492,LOC106561213 coding upstream 864237 14539903 ~ 14546114 (-)
AMCG00010100 smad7,LOC106561252 coding upstream 1133340 14809006 ~ 14829310 (-)
AMCG00010104 NA coding upstream 1212798 14888464 ~ 14896353 (-)
G77760 NA non-coding downstream 921479 12718883 ~ 12721609 (-)
G77758 NA non-coding downstream 1099448 12543435 ~ 12543640 (-)
G77755 NA non-coding downstream 1129167 12462963 ~ 12513921 (-)
G77738 NA non-coding downstream 1184969 12432913 ~ 12458119 (-)
G77713 NA non-coding downstream 1283521 12358327 ~ 12359567 (-)
G77852 NA non-coding upstream 495645 14171311 ~ 14171582 (-)
G77878 NA non-coding upstream 731952 14407618 ~ 14407820 (-)
G77887 NA non-coding upstream 765950 14441616 ~ 14446141 (-)
G77896 NA non-coding upstream 829772 14505438 ~ 14511946 (-)
G77895 NA non-coding upstream 838262 14513928 ~ 14519622 (-)
AMCG00010082 NA other downstream 172833 13347541 ~ 13470255 (-)
G77544 NA other downstream 1913923 11728503 ~ 11729165 (-)
AMCG00009989 NA other downstream 5321744 8314109 ~ 8321344 (-)
AMCG00009987 NA other downstream 5435761 8195735 ~ 8207327 (-)
AMCG00009962 NA other downstream 6353394 7284862 ~ 7289694 (-)
AMCG00010142 LOC104932682,LOC108255669 other upstream 2533653 16209319 ~ 16224041 (-)
AMCG00010169 cnot6l,LOC107752360 other upstream 3606980 17282646 ~ 17295515 (-)
AMCG00010183 stoml2 other upstream 3798163 17473829 ~ 17478791 (-)
AMCG00010188 NA other upstream 4165041 17840707 ~ 17844389 (-)
AMCG00010190 NA other upstream 4177201 17852867 ~ 17855821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001792 unc5c coding NC_007121.7 CM002894.2 1052591 ~ 1107558 (+)
grasscarp (Ctenopharyngodon idella) G388606 NA non-coding CI01000203 null 677074 ~ 828020 (-)