AMCG00021871


Basic Information

Item Value
gene id AMCG00021871
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34820340 ~ 34824676 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021871
CCGGCGCGTAATCAATACGTCACTACGTCCGCCTCTTTGAGGCATAAGATAGATACACCACAAAATAACAACAGGAAGAAGACCCAACTTTTAAAACGAAGCGGGATTTGGactagtagtagtatatattcatatttaagCTTCAAGAGTTGGGTCTGAGAAGGAGAAGGGAACCATGAAGAGAGGAAAGGTGTTTGCACCAGAACCAGACGAGTGTGGAATCTGGTTGGACACGGCAGagctgaaggagaagaagaaaaagCCAAAGCGGATTTGTCCCATTACCCAGTTGTTAAACCCCTTGGCAGGAGGTGGCTACAGCATTCAAGTGGCTCttaatttcacacaaaataaacacccCTTGCCTATTACTAAACAAACCACAATCTCTTCATTCTTCACTGCAAAGTGCACAGACAGTAAAAACAACAAGTCTCAAGATGCAGACTCGGATGATTCCGATTTCAAGTCTTTGCCATCATCTCAATCTGGTTGGACTGGAAGGAAACGGAAATACTGCTCAGACAGAAATGACATCAATCTCTCCATTGGCTCTGTGGATACAGGGGAAACCAGCATCTCTGTTCTGAGCACACCACAGATGGAAGATAATGACTGCCTGAAGCAAGAGAAGTACAGTCAACGTCTTAGGTGTGACCGTGACAGCAGTTTATCTAATGATGACACTTTGCACACAAAGATTACTGGGAGACTTCTGCTCAGTATGGGTGACAGTTCAGAGCTTCTTGGATGGAGGAATGGTCAACCTGTGATCAACACAGCATTGGATGCTGTGGACTGCACAGCTTCAGAGGCGTCTGAGGAACACATGTTTTCTTTCCAAGATGGATTTGCTGAAGCTGGTGAAATTTCAACAGAGACTGGGGAGGCCAGTTTGACTCGGTGTACCTTTACCCAGGATTCTCAGGGAAACCGAGTCATCGCACACCGAACTCCACAGCCAGCTGTTCCCAAGAAGCCAATCCTGGATAATGAAGGAAGTCAACTCTGGCTGActggagacacagagagcttgAGCACAGAGAGGTTTTTCCATACTTTACTGAGGCAGGGGGGTTACACATCCACACAGAAGAGAATTGACTGCTTCAAGTCTCAAAAAACACCCCAGCCTGTCAATAGCACATTTAATGAGTCTCAGGAGATCCGGGGGGATTTTGGTGCAGACAAGGAGAACAAGTGCTCATCTGATCCTCTCATAACCTGGAAACGCAGGGGCTCTGTTCTGGGACAGTCGCCTCTGAAAGGCACACAGCAGGACAAGGGGCTGTGGTCATCACCCAAAAGAGCTCGGGTGCAGAAGACTCTGGCCAATACTCAGGCATTGCTCTTTACTCAGGACACCCAGGGAAACAGAGTAATAGCCCATCGTAGAAGCCAGGGCTGGACATGCAGAAGCCCCCTAAAAGACCAGACCAATTGGTCCCAGTCTAGGAACTGGGACAGTCCAATAAAGAGCCCTATATCTCATACATCCTTACATGAGGTCAATCAGAGCAACCTGGACTTTGATTTGGAGCCAGACTTGCTTTTTACACAGGACTCTGAGGGGAACACGGTGATTAAACACCAATAACCTTTGCACAAAAAGATACCCATACCCTGGATTCTTACTCCTCAAAACTGTCTGAGAGGGTTCTTATAAATATAGCAtcaaaattgatttattaaaatataatgcatacacTTGCTgttcttttagtttttcacatccacaaaacaaaatctgtaaatcTTGATGTTATTTAGGAATACCTCATCAACATTGCTTAatttttctgaatgtttttttttttgtttttttttttaatattttactgatTTGTGTCTACTCAAATGTGATTTGCTGAAGACCACATAAAAAACATAGAATCAAGGCCCATAATAAGAACTGGCTTTGAAGGGAGTTCATTACACAAGACCAGTGTGTTCAGTGCATTCCTTATACTAGGAGTCTGAGATACCCTGGCTCCCCTTTCCCTTAATAAAGAACATAAAGCACAATTATTTGTTGCCACAGAGGGCACTTGCTTGTCAAATATTGGTTTGCCAGCATTGTGTATTGAAGTGCTGGGGAgttaaaaacaaagccaaaactTCAATATAGATTTTCAGATAGCAAATGAAGCCCTGagattgttttgtaattattatttagtttaatgtGAAATTGTACTACCTCAAAGCAAAGCATATCCAGTGAACCAGTTTTTGAATGCCCTATAACTTTGCCAGGTCCAAAATTACTAATGTCTAAATGTCTAATGTATAGTtactatttgtatttcattcatttgcAGATTCTTAGAGTCAGCAGATTCTATAATACCTCACAATATGCCACTATAGCTGTGGTTCTAGCACATTATATTTTGAGTGTGGTTAAACCTGACAACCAAGACTTGCAGTTTTGACCCATATACTGTTAAATCCATCAAAAGCCAATGTTATGACCTACACCAGTCAATTGTAATACCCCTCTCAAAAAACTGGGTTTTGATGTCAAAGTCTAAAGTATGTTAATTTTccattattgctcttcattagtataaattacttttaagaCCCTGAGATACAGTTAAATGGTTAAAAGAAACTGTTTGGATTTATGATTGTggatgtataattatatttgatgTTTTCTGGTTTTGGCACTGAAAAATGCCTACTGTCTTTTCGTGTAATTTGTGATTGTAAAACTGATACTGTACTTTTTCCACCATTACGTTTCCTCATTAAATGTACACTAACAATAAAAAA

Function

GO: NA

KEGG:

id description
K16800 AUNIP, AIBP; aurora kinase A and ninein-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021871 True 2781 mRNA 0.41 5 34820340 34824676

Neighbor

gene id symbol gene type direction distance location
AMCG00021872 NA coding upstream 83997 34718666 ~ 34736343 (+)
AMCG00021874 rprd1a coding upstream 104173 34699848 ~ 34716167 (+)
AMCG00021875 NA coding upstream 129673 34685015 ~ 34690667 (+)
AMCG00021873 fhod3 coding upstream 141584 34625048 ~ 34678756 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding upstream 212719 34596916 ~ 34607621 (+)
AMCG00021883 NA coding downstream 156901 34981577 ~ 34983088 (+)
AMCG00021882 NA coding downstream 252425 35077101 ~ 35086504 (+)
AMCG00021880 NA coding downstream 283939 35108615 ~ 35175768 (+)
AMCG00021884 NA coding downstream 375569 35200245 ~ 35218131 (+)
AMCG00021886 NA coding downstream 755283 35579959 ~ 35593338 (+)
G89010 NA non-coding upstream 400283 34419791 ~ 34420057 (+)
G89006 NA non-coding upstream 432668 34387254 ~ 34387672 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding upstream 434138 34383959 ~ 34386202 (+)
G88980 NA non-coding upstream 446675 34369970 ~ 34373665 (+)
G88938 NA non-coding upstream 642862 34176954 ~ 34177478 (+)
G89222 NA non-coding downstream 582034 35406710 ~ 35406984 (+)
G89280 NA non-coding downstream 1036240 35860916 ~ 36195602 (+)
G89283 NA non-coding downstream 1067487 35892163 ~ 35893862 (+)
G89285 NA non-coding downstream 1075967 35900643 ~ 35901176 (+)
G89298 NA non-coding downstream 1139082 35963758 ~ 35970466 (+)
AMCG00021802 kdm1b other upstream 4351420 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 4412568 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 5435015 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 5544993 29264827 ~ 29275347 (+)
G88276 NA other upstream 5755001 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 101877 34926553 ~ 35077090 (+)
G89142 NA other downstream 386457 35211133 ~ 35263537 (+)
G89299 NA other downstream 1139895 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 1825556 36650232 ~ 36659244 (+)
G89578 NA other downstream 3296581 38121257 ~ 38151049 (+)

Expression


Co-expression Network