LOC122327583


Basic Information

Item Value
gene id LOC122327583
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3595342 ~ 3596416 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247658.1
gattcagagacagactgaagctggacgaGCGGACCGGATCACTGACCATCACTAACTTCACGACACAACACACTGGACTCTACACGGTGAAGATCAACAGAAGCGCAGAAACCTACAGAAACAAGAGTTTTGATGTTTTGCCAGAGTTTCAGTGATTTCAGAGGAAAAGGAGGTAAATGAAAATGAAGTGAAGTCTGATGGAAATCATCTGAATGTATGAAGACTGAAATCATCAACacagaaatgaagaaatgagCCGTGTACTCACAAATATCATATAGCTTTTAGAAAATATAGTTTATCACAGCATTTCTCTAACCACTGTATGTGCTgctttatgtaataaataacactaaaataga
>XR_006247659.1
CAGAGGTGAGTGTCTCCGGTCAGTTTAATAATGACCACAGCTCTTCCTCATACAGTCTGCTTTTTATCTGCAGGTGAAATTATTAAAGACCAGACCATTTATTTAGACCAGAACACtgcctttcttcttctctgaaATGCAGCAAACTGATAAAACAGCATCTAAAATCTTAGAAATTTCAAAGGGCTGTGCAGAATGACAATATATACTGTGACATTCAATATAATTTTCAGTGATTTCAGAGGAAAAGGAGGTAAATGAAAATGAAGTGAAGTCTGATGGAAATCATCTGAATGTATGAAGACTGAAATCATCAACacagaaatgaagaaatgagCCGTGTACTCACAAATATCATATAGCTTTTAGAAAATATAGTTTATCACAGCATTTCTCTAACCACTGTATGTGCTgctttatgtaataaataacactaaaataga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247658.1 False 362 lncRNA 0.38 3 3595342 3596416
XR_006247659.1 True 443 lncRNA 0.34 3 3595483 3596416

Neighbor

gene id symbol gene type direction distance location
LOC122327571 NA coding upstream 228119 3366037 ~ 3367223 (+)
zmp:0000000652 NA coding upstream 305737 3287920 ~ 3289605 (+)
LOC122327483 NA coding upstream 315134 3278181 ~ 3280208 (+)
si:dkey-222f2.1 si:dkey-222f2.1,LOC107712176,LOC107694007,LOC107718458,LOC107698573 coding upstream 344713 3245640 ~ 3250629 (+)
zgc:171566 zgc:171566,LOC107718463,LOC107698580,LOC107549371,LOC107702651,LOC107712179,LOC108444051 coding upstream 398978 3193319 ~ 3196364 (+)
LOC122328128 NA coding downstream 55654 3652070 ~ 3654665 (+)
LOC122328130 NA coding downstream 131125 3727541 ~ 3729956 (+)
LOC122328133 NA coding downstream 166739 3763155 ~ 3765161 (+)
LOC122327521 LOC107570673,LOC107599107,LOC107698295,LOC107750698,LOC107574907,LOC107575767 coding downstream 168832 3765248 ~ 3766219 (+)
LOC122328139 NA coding downstream 188881 3785297 ~ 3786625 (+)
LOC122327589 NA non-coding upstream 20867 3572138 ~ 3574475 (+)
LOC122327598 NA non-coding upstream 23200 3570299 ~ 3572142 (+)
LOC122327584 NA non-coding upstream 31950 3555541 ~ 3563392 (+)
LOC122327585 NA non-coding upstream 44142 3548779 ~ 3551200 (+)
LOC122327599 NA non-coding upstream 50800 3534021 ~ 3544542 (+)
G149033 NA non-coding downstream 2529 3598945 ~ 3599215 (+)
G149034 NA non-coding downstream 4253 3600669 ~ 3601519 (+)
G149035 NA non-coding downstream 5325 3601741 ~ 3602132 (+)
G149036 NA non-coding downstream 5876 3602292 ~ 3602576 (+)
G149169 NA non-coding downstream 134034 3730450 ~ 3925994 (+)
G148992 NA other upstream 42 3592661 ~ 3595300 (+)
LOC122327325 NA other upstream 2969 3297362 ~ 3592373 (+)
G149028 NA other upstream 20869 3571093 ~ 3574473 (+)
LOC122327575 NA other upstream 340481 3253738 ~ 3254861 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other upstream 356384 3229267 ~ 3238958 (+)
LOC122328138 NA other downstream 181164 3777580 ~ 3779676 (+)
G149157 LOC107561598,LOC107717161,LOC107549384,LOC107742789,LOC107704500 other downstream 255647 3852063 ~ 3853371 (+)
LOC122327446 NA other downstream 457111 4053527 ~ 4059373 (+)
LOC122327447 LOC107741386,LOC107568440 other downstream 616810 4213226 ~ 4240787 (+)
LOC122327552 LOC107568440,LOC107698560 other downstream 823147 4419563 ~ 4421001 (+)

Expression


Co-expression Network