LOC122327585


Basic Information

Item Value
gene id LOC122327585
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3548779 ~ 3551200 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU220423
AGAACAATCAGGGaccCAAATCCTTCAGAGATTAAGCTAATGGAGAGTGCAGCGGAGAACAACGTAATGAATGGACAAAACCAAGATAACCAGGACACACGTTAATGACCACGACCTTCTTTGAAACGGAGAACAGCAGTGGTTTATAGTAACTGTACACATGAAGGAAAATATACGCGTGAACCGTTTGAGCTTGAAACCCTTTTATTTGCTTTGGCATAAATAGAGAAGCGTTCATTATATGAAGAAGCTGATATAACAGATCGCTGTTTGCGCTGAGTCTGATATTGcactattattaaatttttattacatttctagtTTGACTGATTTGAAGTGATGATGTTACACCGTGAAGTAGCTTGATTGTTACGCCTGaagtatttttcttgtttttatttgatgttctTCTGTTGTTACATCACACATGGGCTTTGCCTGAAGTGTTCATGgtcaaatattttgtatttgaaatattgtaCCTAGATCATTATATATGTTTCATATGTGTCTTTCACCTGATAAGATGTGAATGTGATCTCTGAAGTGTGTTCTGAATTTCTGAAGATGTTTTGCTGAAGACTGATATCACGTTTTAAACGGGATGaagatttattttcttctgctttttgCTTCATTTATAAACCAATGCGAAAATGCCTTACAGTTGACTGTtagttttaagaaaataaaacgcTGA
>TU220424
CTGAGTATCTGTGACAAAATCAGTGTTTCATTCTGTAGGAGTCTAAAGATATTTCCGGCAgatcaaaatgaaattattagaCTTTATTATATGTCCTCTAGATGACTCTGACATTGTCTGTGACAGTGAACGGTTTACAGTAAagtaaagtttgtttttaataaggaTGAACAAACACTATGAAAAATAAGTCATTcctgttcatttaaatatcataatacGAATATAAAAGAAGACTAGAGAAGTACTatttaaatggaaagaaaatactttttaaatggaagttaaatcaaagaaacaaaatgatcaGTCAACAAAAACCTGCGTTCTTCAAACAAATTGCTTTGTCATTGTTTATAACCCTTGGATTTAATGTTTGTTGCTGTAGCTTCACTGTAGATGAATCATTACAATACAGCATCTGTGTTATATAACGagttctgcttgttttttttctctctcagaccCAAATCCTTCAGAGATTAAGCTAATGGAGAGTGCAGCGGAGAACAACGTAATGAATGGACAAAACCAAGATAACCAGGACACACGTTAATGACCACGACCTTCTTTGAAACGGAGAACAGCAGTGGTTTATAGTAACTGTACACATGAAGGAAAATATACGCGTGAACCGTTTGAGCTTGAAACCCTTTTATTTGCTTTGGCATAAATAGAGAAGCGTTCATTATATGAAGAAGCTGATATAACAGATCGCTGTTTGCGCTGAGTCTGATATTGcactattattaaatttttattacatttctagtTTGACTGATTTGAAGTGATGATGTTACACCGTGAAGTAGCTTGATTGTTACGCCTGaagtatttttcttgtttttatttgatgttctTCTGTTGTTACATCACACATGGGCTTTGCCTGAAGTGTTCATGgtcaaatattttgtatttgaaatattgtaCCTAGATCATTATATATGTTTCATATGTGTCTTTCACCTGATAAGATGTGAATGTGATCTCTGAAGTGTGTTCTGAATTTCTGAAGATGTTTTGCTGAAGACTGATATCACGTTTTAAACGGGATGaagatttattttcttctgctttttgCTTCATTTATAAACCAATGCGAAAATGCCTTACAGTTGACTGTtagttttaagaaaataaaacgcTGA
>XR_006247661.1
CCACTAATACAGAACTAATCAAGTCAGCACAGATTTGAACTTTAGACTGAAAAGCCCTCTGTGTGTCGTTCTGAACAGACTGAGAAAACATGCATAACTtgaaatactactaataaatattaactttatAAGCAACCAGGACTCTATTATGCTGAGTATCTGTGACAAAATCAGTGTTTCATTCTGTAGGAGTCTAAAGATATTTCCGGCAgatcaaaatgaaattattagaCTTTATTATATGTCCTCTAGATGACTCTGACATTGTCTGTGACAGTGAACGGTTTACAGTAAagtaaagtttgtttttaataaggaTGAACAAACACTATGAAAAATAAGTCATTcctgttcatttaaatatcataatacGAATATAAAAGAAGACTAGAGAAGTACTatttaaatggaaagaaaatactttttaaatggaagttaaatcaaagaaacaaaatgatcaGTCAACAAAAACCTGCGTTCTTCAAACAAATTGCTTTGTCATTGTTTATAACCCTTGGATTTAATGTTTGTTGCTGTAGCTTCACTGTAGATGAATCATTACAATACAGCATCTGTGTTATATAACGagttctgcttgttttttttctctctcagaccCAAATCCTTCAGAGATTAAGCTAATGGAGAGTGCAGCGGAGAACAACGTAATGAATGGACAAAACCAAGATAACCAGGACACACGTTAATGACCACGACCTTCTTTGAAACGGAGAACAGCAGTGGTTTATAGTAACTGTACACATGAAGGAAAATATACGCGTGAACCGTTTGAGCTTGAAACCCTTTTATTTGCTTTGGCATAAATAGAGAAGCGTTCATTATATGAAGAAGCTGATATAACAGATCGCTGTTTGCGCTGAGTCTGATATTGcactattattaaatttttattacatttctagtTTGACTGATTTGAAGTGATGATGTTACACCGTGAAGTAGCTTGATTGTTACGCCTGaagtatttttcttgtttttatttgatgttctTCTGTTGTTACATCACACATGGGCTTTGCCTGAAGTGTTCATGgtcaaatattttgtatttgaaatattgtaCCTAGATCATTATATATGTTTCATATGTGTCTTTCACCTGATAAGATGTGAATGTGATCTCTGAAGTGTGTTCTGAATTTCTGAAGATGTTTTGCTGAAGACTGATATCACGTTTTAAACGGGATGaagatttattttcttctgctttttgCTTCATTTATAAACCAATGCGAAAATGCCTTACAGTTGACTGTtagttttaagaaaataaaacgcTGAGTGACTCttta

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220423 False 700 lncRNA 0.35 3 3548779 3551189
TU220424 False 1151 lncRNA 0.33 2 3549087 3551189
XR_006247661.1 True 1313 lncRNA 0.33 2 3548936 3551200

Neighbor

gene id symbol gene type direction distance location
LOC122327571 NA coding upstream 181556 3366037 ~ 3367223 (+)
zmp:0000000652 NA coding upstream 259174 3287920 ~ 3289605 (+)
LOC122327483 NA coding upstream 268571 3278181 ~ 3280208 (+)
si:dkey-222f2.1 si:dkey-222f2.1,LOC107712176,LOC107694007,LOC107718458,LOC107698573 coding upstream 298150 3245640 ~ 3250629 (+)
zgc:171566 zgc:171566,LOC107718463,LOC107698580,LOC107549371,LOC107702651,LOC107712179,LOC108444051 coding upstream 352415 3193319 ~ 3196364 (+)
LOC122328128 NA coding downstream 100870 3652070 ~ 3654665 (+)
LOC122328130 NA coding downstream 176341 3727541 ~ 3729956 (+)
LOC122328133 NA coding downstream 211955 3763155 ~ 3765161 (+)
LOC122327521 LOC107570673,LOC107599107,LOC107698295,LOC107750698,LOC107574907,LOC107575767 coding downstream 214048 3765248 ~ 3766219 (+)
LOC122328139 NA coding downstream 234097 3785297 ~ 3786625 (+)
LOC122327599 NA non-coding upstream 4237 3534021 ~ 3544542 (+)
G149023 NA non-coding upstream 10109 3536133 ~ 3538670 (+)
G149013 NA non-coding upstream 98259 3378086 ~ 3450520 (+)
G149012 NA non-coding upstream 99626 3388244 ~ 3449153 (+)
G149018 NA non-coding upstream 127288 3399069 ~ 3421491 (+)
LOC122327584 NA non-coding downstream 4341 3555541 ~ 3563392 (+)
LOC122327598 NA non-coding downstream 19099 3570299 ~ 3572142 (+)
LOC122327589 NA non-coding downstream 20938 3572138 ~ 3574475 (+)
LOC122327583 NA non-coding downstream 44142 3595342 ~ 3596416 (+)
G149033 NA non-coding downstream 47745 3598945 ~ 3599215 (+)
LOC122327575 NA other upstream 293918 3253738 ~ 3254861 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other upstream 309821 3229267 ~ 3238958 (+)
tma7 NA other upstream 324288 3223617 ~ 3224491 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other upstream 395198 3114201 ~ 3153581 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other upstream 500647 3044638 ~ 3048132 (+)
G149028 NA other downstream 19893 3571093 ~ 3574473 (+)
G148992 NA other downstream 41461 3592661 ~ 3595300 (+)
LOC122328138 NA other downstream 226380 3777580 ~ 3779676 (+)
G149157 LOC107561598,LOC107717161,LOC107549384,LOC107742789,LOC107704500 other downstream 300863 3852063 ~ 3853371 (+)
LOC122327446 NA other downstream 502327 4053527 ~ 4059373 (+)

Expression


Co-expression Network