RNA id: XR_006247661.1


Basic Information

Item Value
RNA id XR_006247661.1
length 1313
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id LOC122327585
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3548779 ~ 3551200 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACTAATACAGAACTAATCAAGTCAGCACAGATTTGAACTTTAGACTGAAAAGCCCTCTGTGTGTCGTTCTGAACAGACTGAGAAAACATGCATAACTtgaaatactactaataaatattaactttatAAGCAACCAGGACTCTATTATGCTGAGTATCTGTGACAAAATCAGTGTTTCATTCTGTAGGAGTCTAAAGATATTTCCGGCAgatcaaaatgaaattattagaCTTTATTATATGTCCTCTAGATGACTCTGACATTGTCTGTGACAGTGAACGGTTTACAGTAAagtaaagtttgtttttaataaggaTGAACAAACACTATGAAAAATAAGTCATTcctgttcatttaaatatcataatacGAATATAAAAGAAGACTAGAGAAGTACTatttaaatggaaagaaaatactttttaaatggaagttaaatcaaagaaacaaaatgatcaGTCAACAAAAACCTGCGTTCTTCAAACAAATTGCTTTGTCATTGTTTATAACCCTTGGATTTAATGTTTGTTGCTGTAGCTTCACTGTAGATGAATCATTACAATACAGCATCTGTGTTATATAACGagttctgcttgttttttttctctctcagaccCAAATCCTTCAGAGATTAAGCTAATGGAGAGTGCAGCGGAGAACAACGTAATGAATGGACAAAACCAAGATAACCAGGACACACGTTAATGACCACGACCTTCTTTGAAACGGAGAACAGCAGTGGTTTATAGTAACTGTACACATGAAGGAAAATATACGCGTGAACCGTTTGAGCTTGAAACCCTTTTATTTGCTTTGGCATAAATAGAGAAGCGTTCATTATATGAAGAAGCTGATATAACAGATCGCTGTTTGCGCTGAGTCTGATATTGcactattattaaatttttattacatttctagtTTGACTGATTTGAAGTGATGATGTTACACCGTGAAGTAGCTTGATTGTTACGCCTGaagtatttttcttgtttttatttgatgttctTCTGTTGTTACATCACACATGGGCTTTGCCTGAAGTGTTCATGgtcaaatattttgtatttgaaatattgtaCCTAGATCATTATATATGTTTCATATGTGTCTTTCACCTGATAAGATGTGAATGTGATCTCTGAAGTGTGTTCTGAATTTCTGAAGATGTTTTGCTGAAGACTGATATCACGTTTTAAACGGGATGaagatttattttcttctgctttttgCTTCATTTATAAACCAATGCGAAAATGCCTTACAGTTGACTGTtagttttaagaaaataaaacgcTGAGTGACTCttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220420 lncRNA upstream 4394 3534021 ~ 3544542 (+) False LOC122327599
XR_006247679.1 lncRNA upstream 4484 3540252 ~ 3544452 (+) True LOC122327599
TU220421 lncRNA upstream 10266 3536133 ~ 3538670 (+) True G149023
TU220399 lncRNA upstream 99783 3409087 ~ 3449153 (+) False G149012
TU220416 lncRNA upstream 127445 3399069 ~ 3421491 (+) True G149018
XR_006247660.1 lncRNA downstream 4341 3555541 ~ 3563392 (+) True LOC122327584
XR_006247678.1 lncRNA downstream 19099 3570299 ~ 3572142 (+) True LOC122327598
XR_006247668.1 lncRNA downstream 20938 3572138 ~ 3574475 (+) True LOC122327589
XR_006247658.1 lncRNA downstream 44142 3595342 ~ 3596416 (+) False LOC122327583
XR_006247659.1 lncRNA downstream 44283 3595483 ~ 3596416 (+) True LOC122327583
XM_043223024.1 mRNA upstream 181713 3366037 ~ 3367223 (+) True LOC122327571
XM_043222605.1 mRNA upstream 244182 3297362 ~ 3304754 (+) False LOC122327325
XM_043222959.1 mRNA upstream 259331 3287920 ~ 3289605 (+) True zmp:0000000652
XM_043222882.1 mRNA upstream 268728 3278181 ~ 3280208 (+) True LOC122327483
XM_043223838.1 mRNA downstream 100870 3652070 ~ 3654665 (+) True LOC122328128
XM_043223840.1 mRNA downstream 176341 3727541 ~ 3729956 (+) True LOC122328130
XM_043223843.1 mRNA downstream 211955 3763155 ~ 3765161 (+) True LOC122328133
XM_043222943.1 mRNA downstream 214048 3765248 ~ 3766219 (+) True LOC122327521
XM_043223845.1 mRNA downstream 226384 3777584 ~ 3779676 (+) True LOC122328138
XR_006247633.1 other upstream 244182 3297362 ~ 3304754 (+) True LOC122327325
TU220341 other upstream 313149 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 313149 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 313149 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 324446 3223628 ~ 3224490 (+) False tma7
TU220429 other downstream 19893 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 39439 3590639 ~ 3592373 (+) False LOC122327325
TU220366 other downstream 41461 3592661 ~ 3595300 (+) True G148992
TU220657 other downstream 226380 3777580 ~ 3778183 (+) False LOC122328138
TU220637 other downstream 300863 3852063 ~ 3853371 (+) True G149157

Expression Profile