RNA id: XR_006247668.1


Basic Information

Item Value
RNA id XR_006247668.1
length 662
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC122327589
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3572138 ~ 3574475 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTAGCTGAAATCAACAGAAAGGCTATAATCACATCTGATGGTCCTGATGGGAGATTCAAAGACATACTACAGGTGGACCATtggactggatctctgaccatcaggaATATCGGAACCAAACACTCTGGATATTATGAAGTTGGTATCAGGAGTGGAAGTAGCAGATACACCACACATACGTCATTTAATGTGACTGTCAGCGgttcaggtctgtctcCAGCTGCTGTAGCAGGGATTGTTGGTAGTATTGTTGTTATTCTGCTGGCTGCAGCTGTAGTTATAGCTCTTGTTGTGATTCACCATCGCCGCAGGATTGCTAAACTAAAAAGACAAAGGAAAAATGTCCGCCCGCATGTCAAACTTAAGAAATGCTgttttttttaaaaccttcaGAAGGGAGGCAATGACCAGCCGTCGATCGGTGCTCTGGTGATTAAATTGTTCATGAAGAATGTTGCAACCTGAGTAATACTGATAATACTTTAGTTTTGACATGTTTCGATTTGTGATGCGATTTGTTAAACTTACAAAATTTAGCaggacaaaacattttattcgaCACCCCTGCACTGTTACGCTGCATGTATTGGTGTTTATGCTTCAATATGTTGTAGATGACTTttgtaaaaatagttaaaaataaacttttatttgacaata

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247660.1 lncRNA upstream 8746 3555541 ~ 3563392 (+) True LOC122327584
XR_006247661.1 lncRNA upstream 20938 3548936 ~ 3551200 (+) True LOC122327585
TU220423 lncRNA upstream 20949 3548779 ~ 3551189 (+) False LOC122327585
TU220424 lncRNA upstream 20949 3549087 ~ 3551189 (+) False LOC122327585
XR_006247679.1 lncRNA upstream 27686 3540252 ~ 3544452 (+) True LOC122327599
XR_006247658.1 lncRNA downstream 20867 3595342 ~ 3596416 (+) False LOC122327583
XR_006247659.1 lncRNA downstream 21008 3595483 ~ 3596416 (+) True LOC122327583
TU220434 lncRNA downstream 24470 3598945 ~ 3599215 (+) True G149033
TU220437 lncRNA downstream 26194 3600669 ~ 3601519 (+) True G149034
TU220435 lncRNA downstream 26256 3600731 ~ 3601519 (+) False G149034
XM_043223024.1 mRNA upstream 204915 3366037 ~ 3367223 (+) True LOC122327571
XM_043222605.1 mRNA upstream 267384 3297362 ~ 3304754 (+) False LOC122327325
XM_043222959.1 mRNA upstream 282533 3287920 ~ 3289605 (+) True zmp:0000000652
XM_043222882.1 mRNA upstream 291930 3278181 ~ 3280208 (+) True LOC122327483
XM_043223838.1 mRNA downstream 77595 3652070 ~ 3654665 (+) True LOC122328128
XM_043223840.1 mRNA downstream 153066 3727541 ~ 3729956 (+) True LOC122328130
XM_043223843.1 mRNA downstream 188680 3763155 ~ 3765161 (+) True LOC122328133
XM_043222943.1 mRNA downstream 190773 3765248 ~ 3766219 (+) True LOC122327521
XM_043223845.1 mRNA downstream 203109 3777584 ~ 3779676 (+) True LOC122328138
XR_006247633.1 other upstream 267384 3297362 ~ 3304754 (+) True LOC122327325
TU220341 other upstream 336351 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 336351 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 336351 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 347648 3223628 ~ 3224490 (+) False tma7
TU220368 other downstream 16164 3590639 ~ 3592373 (+) False LOC122327325
TU220366 other downstream 18186 3592661 ~ 3595300 (+) True G148992
TU220657 other downstream 203105 3777580 ~ 3778183 (+) False LOC122328138
TU220637 other downstream 277588 3852063 ~ 3853371 (+) True G149157
TU220805 other downstream 662979 4237454 ~ 4238069 (+) False LOC122327447

Expression Profile