G30936


Basic Information

Item Value
gene id G30936
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9993781 ~ 9998637 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU35002
GGCGACCAGATGTGCATTCATATTTTTTATTAAAATATATACTTAAAAAAATGTGGATATAAAACACTTTGACAACATTCATTCACACAAGCTCAGTGTGTTGCAGCATTCCTTGTGACACTTCTGTTTGATTTCAGAGTAATCTGCAGTTTTGCAAATTAAGCAAACTTCACACAAGCAAATGAAGTTGAATTGAACTACGTCTCATACAGATGTAGAAATACTCCCCTGTTCCTCTGTAAGCTTTCAGTGCTGTAATGATAATGCTGCAATTGTTTCAACAAGAGAGCACTTCAAAAGATGTGTAGAGAGGCCGAATCTGTGAAGAAACATTCCTCCACTCACATTCAAATGTAGCCAATATAACTGAAATCCCTTTATGTAAAGTCCTGTTAAAGAAACAGTTCACCCACAAAAATGAACATTCTATCATCATTTACTCACCCTCATATCACTCAAAACCTGTATGACTGACTTTATTTTGTGGAACATAAATTCTGAAGACTGCCCTGATTGCTCTATTCCATACAATCACAATAAGTGAGAACTGAAGATTTCAAGGTTAAAAAAAAGAAAAGCAAAAGCAACATAAAAGAATCCATTCAACTTGTGTGCGATAGTCCAAGACATCTGAAGTCATACAATAGCTTTGTGTGAGAAATATAAAATGTAAAGATGGTTTGCCAATAATCTCTCCCTCATTGAGCCAGTGAGTAGATTGTGGGGAGCGGCTCAATCAAATTTGTGAATTAATCATTTAAAACCAATTTTGTAAATTGAATCAACCAATTAATTGAAAAGATCTGACTGAATGATTTTAATTCTTAAAGAATGGCTCAAATTATACTCAAATGATTTCATAAGACATGGAATACAGTGCCTAAGTTGTATGGAACACTTTTATACACTGCCAGAAAAAAAACAGAAAAAAAATGCAGTTTGGATTTAAACAGGCAAATTCTGTGCCCACATGTACACGGGTATTTTTATATATATACTTTTTCGTCCATCGTTTAAAAAAAATCACGTCCACATGAAAACGCAAAATATATCAGAGCTCGAGTTGAAGCTGCTTCATTGAGTCCCTCCTCAGTGGACAGCAAGCCAAATTAGCTAACCTAATACCCTAAAGATTATATGGGCAAACAAACTCGTTAAGTTCTGTCAAGAGCATGCCAAACCAACAGGTGGCAATATAACTCTAACCGTAAAGCAATGTTGGCCAATCAGAAGCATGGAAAAAAGGTTATTACCGGTTCTGCTTCTGACGTCACAAGCCAAAATTTCCGGTTTCACCTTCTACAAGACAACACTGCAACCGGAGTTTCTAAAAATCTTCACCCTGGCAGGAGTTTTCAAAGATCGGTTTCAGTGACCAGATACAGCGTTTGCATGTGGACGAACAGCCAAACCACATATAAAAAGCTGCGGTTTTGAAAATACCCATGTTCGTGTGGACAGGGCCTATGACTGGATCATTATTGCTGTGATTATTATGTTTATAGCATGTTATATGTTGGGCAACCATTCTTTTAACCCTAACTGAGGGATTGCGTGGCTTTTCATTTCTTAAACAACCATGTTGACTCTTGCAATGTCAATACAAGATCTTGACCAAAACTTGATACACCTCTTGATGGAAATAACATCACAACATTTATTTTCCTCAAGAGGCGCATCAATTTTTGGTCAAGATCTTATATTGACAATGCAAGAGTCAAGCACTCTGTAAAGTCTCCTCCAGCACATCCCAAATACTTTGAATGAATTTAAGGTCTGGACTCAGAGGTGCCAATTCATGTGTGAAAATGATTCTTCATGCTCTCTGAACCATTCTTTCACAGTTTAAACCTGATGAATCTTGACATTTTCATTCTGAAATATGGCCATGATATGTCTTCCTACATGGTTGTTTAAGAAATGAAAAGCCACACACTCAATCAATAAAATAACTGTTCCCAAACATATAACATGCTAGAAACATAATAATCACTGCAATAATGTGGTGACTAATCATTAAAAAACATAAAATGAAAAAGAAATGCATTTGTAGAACTTAAATATACCCATTTCATTTTTTCCAAAAATGCCATGAAACATGGCATTGTAGCACAACATGATTTGTGATGCTGAATTCCTGGATACGCCACCATCTTCAAAGCATGGCCCTGTCCCAAATGGCACACTTCATGTGCACTTGCGGTCTTGTGAACTTACAATGGCTGCCGCATACGCGTGTCCATAGGTTGTCCTGTTTGTCCTTTTACGTTTCAGAAGGGTGTTTGAGAGCGTCCACTTTGTGGATGATATGCATTCTCGATGCGCACTTTTGCCGAGTCCGCACTAAAGCAACCCCCGCAGCAGACGTCTACCCGACAGTCAAAGTGGCATTACGCCATGAAGGTGTGACTTGGAGGAAGATCGCAAGGGCTTAGGGTTCCATTTGGGACAGGGCTGAAGAGGAACAGGGAAGAGTCTTTTACAATCTGTCATAAGACGAAGGCAGTCTTGTCACTGTTCATGTTTTTAAAGTCACAAAATCATCCATTCATTTTGCTCCTCCATCAAGTTTTTTTTTTTTCTGCTAGTGAACAAAAAACAAAATCACCATCACTTCTCTTATTAACACAAAGTCACCTTACACAACACTGTCCACACAAAAAAATCCATCATAAAAGTGAAATTCAGCTTGTGTTGGTAGAAAACAAAAGAAAAAAGACTTCATGTGTGAAGTATCCTTTTTTTGTTCTTCTTTCAAGTTATGCCTCACAGCCCAGAGTGAGATCAGACATACAGAGAATGAATGTCACTGAATGGCAGTCTAGTTGGCAACTCCCGTATCCTTTCCAATGTACATGTCAGCGAGTTTTTTAAACTGCGGCCCCCAGTTAGAGAGGTAATCATATTCATGGTCTCCCTCAGTCACGGAGGACTCCAGAGAGCTCAGTGACTCAGCGATTGATCCATTGCCCTCATAAGCATAAGTGGCGAGAGAGTCATAGGGAGGTGCGAAAGGGTCTGTGTCGTTTTCCTGCAGTCTGCTAATAATGAAGTCTCTGACATCCGCACACTCTTTCATGGGTGAAGGTCTGTGATAGGGAAACAGCATCTCGGGGATGATGTCGCGCCGCAGCTTATTGCTTTCGATCACCTCCGGGTGGCGCAGTGTGCCGATGTCAAAGGCTTGCGTGTCCTCCTCGCCACCCCCTTCGTCGTTGTAGCTGACTACGTTATCCCTGACGTCCTCTTTGGAGATGATCAGTGGTTCCTTCCTCCTTTGCTTCTTTAAAGCTGAGAACATCACGACAATCATAAGCAGGATAAGCATGCAGAGAAGTATCGCCACTAGCGCCCCAGTGCTGAGGCCAGCAGAGAGCAGCAACGCATCGACACTGCAGGAACGCATGTTCCCGGTGGCGTCACAGCTGCACACACGAATGGTCAACGTGCTGGTGCTGCTCTGGATGGGGTAGTCGCTGTCGGAGATAACTACTGGCAGATAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU35002 True 3504 lncRNA 0.42 2 9993781 9998637

Neighbor

gene id symbol gene type direction distance location
CI01000004_09779903_09780536 NA coding downstream 212903 9779235 ~ 9780878 (-)
CI01000004_09754664_09774588 CDH6 coding downstream 218708 9753467 ~ 9775073 (-)
CI01000004_09703159_09711600 NA coding downstream 281783 9701926 ~ 9711998 (-)
CI01000004_09639469_09656035 NA coding downstream 337746 9638825 ~ 9656035 (-)
CI01000004_09616639_09622200 RNF31 coding downstream 371121 9616639 ~ 9622660 (-)
CI01000004_10271350_10272027 NA coding upstream 272561 10271198 ~ 10272206 (-)
CI01000004_10290550_10295288 CAHZ coding upstream 291226 10289863 ~ 10295357 (-)
CI01000004_10436514_10438365 NA coding upstream 437862 10436499 ~ 10439459 (-)
CI01000004_10458668_10465442 NA coding upstream 460025 10458662 ~ 10465703 (-)
CI01000004_10553379_10573352 PAXIP1 coding upstream 554400 10553037 ~ 10575243 (-)
G30652 NA non-coding downstream 22050 9971431 ~ 9971731 (-)
G30647 NA non-coding downstream 27949 9965560 ~ 9965832 (-)
G30609 NA non-coding downstream 87378 9906192 ~ 9906403 (-)
G30600 NA non-coding downstream 96381 9897136 ~ 9897400 (-)
G30593 NA non-coding downstream 104025 9889529 ~ 9889756 (-)
G30937 NA non-coding upstream 1185 9999822 ~ 10000074 (-)
G30952 NA non-coding upstream 64492 10063129 ~ 10069703 (-)
G30970 NA non-coding upstream 138646 10137283 ~ 10137647 (-)
G30981 NA non-coding upstream 164324 10162961 ~ 10169883 (-)
G30986 NA non-coding upstream 185456 10184093 ~ 10205019 (-)
G30316 NA other downstream 586860 9377937 ~ 9406921 (-)
G29746 NA other downstream 1635654 8354498 ~ 8358127 (-)
G29656 NA other downstream 2028281 7964364 ~ 7965500 (-)
G29388 NA other downstream 3361874 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 3448209 6538904 ~ 6541252 (-)
G31203 NA other upstream 747800 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 1408828 11406957 ~ 11412907 (-)
G32150 NA other upstream 1777882 11776519 ~ 11780951 (-)
G32207 NA other upstream 2377531 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 4552163 14541515 ~ 14551352 (-)

Expression


Co-expression Network