CI01000006_06006532_06022059 (POLQ)


Basic Information

Item Value
gene id CI01000006_06006532_06022059
gene name POLQ
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6004802 ~ 6022182 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06006532_06022059.mRNA
ATATAAAAGCATATAATTTCAACGTAAAGGATCAGAAACAAAAAACTCAGCTACAAACAAACTTCGCATTTCAAAACAAGAACGATGAGTTTCTTCCTCGTTTGTTTTCTCTCATTCCTCAGGAAGCACAGCGCCATCTCCCGTACAATATTGTGAATGATATGTGGCGATCTGTGTAGTTTTTAAAGCAAAGATATATTTTTTAAACGTTTTAATAGTATTATATTTTAGGTTTAAGTAATGAAACGTTGTGACCACGTTAATGCGACATAATTCCTGCGCTTTGTTCATACCATTCATACTGCAGGTGTCAGTGTTGCTAGCGAGATAGCTGAGCGCGTGATGGCAGTGATTTTGATTCATACAAATGAATCGATTCTTTTGAATTACTAGAAATATCTATACATGGGATGCTTTTGTTTGCTATTGATATTCAAAGTATTTGAATGCAGTAGAATTGTATCTCTTTGTTTGTTTGTTTTTTAAGTTATGAAAGTGACGAGAATGGATCGTTCATTTAAAAGATTCATTCAAAAAATGATTCATTCACGAAGTAAACGCCACTAAACAAGAATGTAATGTAAAAATTACATCTTCACTTTTTAAGTAAAACGGTATGACAATTGACTGTTCTTTGTATGATTTTGAAAGTTTTGTTAAAGCTAAAACGATATAATATTGTGTAATATCTTTATACAGTCACGGGAGGAACATTCAGAATCAACAACACTTTAGACGTGTTTCCCCCGGACAACTGTGTGCAAACACCGCGGGCTCTTTGATTTGGTTGTTTTTTGTTTTCCTTTAACCTTGTTTTGATTTCTTAGTGCTGTCATTAAATATGCATTTACACAAACATATTTTAAATGGCCGACAGGACAAATGAAATATTACTCGTTCAAATAGTTTGCTATGGTGTTAAGTAAATAATTTAATTTAGAAACATGTAAGCTCAACTGGCTGGAGTCATGATAGAAATGCCAGTAACAGCTTTTAATTCAGTAACATGAGTTTGTTTATGTGGAGCGACGAGAGGTAGCAACACGACAGCTACCTTAACAAAATATTTAATTTGACTTTTTATTTTTACACATTGTATGTGAAGGCATTAGTTTACAGTCATTTATTTTTTTAATGTGATGACTACTTCAACGACAAGAAAGATTTATTTGGGACAACATCGGATTGTAAAGACAAAGGGGTAAGATATGTCACCTGAAACTGTGTTGTGCTTCTATTGATGGTGTAGGTTTCTATGGTTATGTTTACAAACTTGGTTAACACGGACCTTTGAATGGGTCGCTGTTCTTAACCCTTAGAAGAACTTTGTTTAATGTACACAAATAAATAAGAGAGACATTGTATGAGTACCCACTGAAAACACTGATGTTTAAATAAACAGAACTGTTTATTATTGAGGCTCTAGATGAGTGAGAAACAATAGCTTGTTTTAAAAGCCTGTTTGTAAGTTGTTTTATGTCAGATGTGAAATGTAAATAAAAACTGTTGTCACTAACTTGTAGTTTTTCATGTAGCTTAGTTCTTGCAGATGAGAAACCATCACACAGACAATCAAGTCGCCTGCAGGCGTGTTCCTCTGTGACAGATATATCTGAGAAGAGAAGATGTAATGAGCCAACAGTATGTTTTTAATTACTTTATATAATATTATGCCACTGCTAAGCTTTGTTACACTAAGTGTAAAAATTAACATTATCTTTTTAAAGCAAATGCAGAATAAGCAATGGATGCCAGGAGACTCCACTCTGGCTATGGATGAGGACATTTTACAAGCCATTGATGAATTGGGTCCGGAAGTCTTGAAATTCAAGAAAGATGAAAACATTCACCAAACTGAATCGGCATCACTTAAGAAAAATGTTGTCTTGCCACAAAATATATGTGAGCAACAAGTACAAAATGCAGAAAATATCGGCCCTTCAAGTCCAGGGTCAGTGTGGTCACCATCAGAGCGCAAAAGAACCAGAACACAAAGCAAAAAAGAGAATGACTGGAGGGATTTGGCTCAAAAGCTTTTGTTCAGTGAAACCAAAAAGACTGAAGCCCGTGGCCGTGAGTTGAAACGTGACAGGGAATATTCTTCTCCTCAAAAGATCCTGAACGCCATGAAAAAAACATCTAAAGTTGCAAATGACAAGCAAAAGTTAAAGTTCAGAAGAGATACCAGCCCAAATGACTCTCTCAGTACCTCCAAGGATTACATTTTGTTCAGTCCGACACATATGGCTGCTGCTAAAGAGCGATCCATGTTGCAGCAGCAGAAGAGATCAATGAAAAACCTCTCGGTTTCTGTGCTGACCCCTCCTCCAGGACTGGATCTTAGTGTCCTCGGTGATGCTACACTACCAGATGCAGACAAGCTTATGCTCTCCAGTTGGGGTCTCCCTAAGCCTGTTCTGGAGAAGTATCAGAGTCTCGGTGTTCAGAGGATGTTTGAGTGGCAGGCTGAGTGTCTGACCTTGGGCAAAGTGTTGGAGGGCCAGAACCTGGTGTATTCTGCTCCAACCAGTGCAGGGAAAACTTTGGTTTCTGAGTTGTTAATCTTGAAGAGAGTTTTGGAAACAAGACAGAAGGCCATGTTCATTCTTCCCTTCGTGTCTGTGGCACGAGAGAAGATGTTTTATCTACAGAGATTTGCTAATATTATACTTGCCATTTTCACCCAGAATGTATTTCAGGAGGCAGGGGTCAGAGTGGAGGGGTATATGGGTAACACTTCTGCGGCTGGTGGGTTTTCAGCTCTGGATGTCGCTGTTTGCACAATAGAGAAAGCTAATGGACTCATCAACAGGCTCATTGAAGAAGACAAATTGGATCTACTTGGTAATGACATTTCCTTACCTCTTAATGTTCTGCCAGAACTTTTGCTGACTAAAATCCAATACATTGGCCAAAAAAAGTCAGCAAGGGACTCTGGTAAAAGTACCTCTCCTGAGGTGCAAATTGTTGGTATGAGTGCCACACTGCCAAACTTGGACCTTCTTGCCCACTGGTTGAATGCTGAGCTGTATAGTACAAACTATCGTCCTGTGCCATTGATGGAGTGGGTCAAGATTGGCACAAATATCTATGACGGATCTCTGAACCTGGTCAGACAGTTCACCCCAGCTCTTCCAGTTAAGGGTGATGATGACCACATTGTTAGCCTCTGCTTTGAGACAGTGCGGGACGGACACTCTGCACTGCTGTTCTGCCCTTCAAAGAACTGGTGTGAGAAACTAGCAGATAGCATTGGAAGAGAGTTTTACAATCTTCATCACAAAGAAATGCAGTCAGGCTCTGGAGTGCAAAGTATATGTTTGAAGCAGGAAGGTCTCCAGGATGTAGTAGCGCAGCTCAAGCGCGCTCCTGCAGGCTTAGACCAGGTCCTTCAGCGGACTGTTCCCTGGGGGGTGGCCTTCCACCATGCAGGTTTGACGTTCGATGAGCGGGATATTCTAGAAGGAGCTTTTCGTCAAGGCTACATTAGGGTGTTAGCTGCCACTTCCACATTGTCATCTGGTGTAAATCTGCCCGCTCGACGTGTGATTATCAGAACCCCTGTTTTCAATGGTCATTTGCTGGACATCCTGACCTATAAGCAGATGGTGGGACGGGCAGGCCGTAAAGGAGTGGACACCATAGGTGAGAGTGTGTTGGTCTGTAAAGAGGCTGAACGTGCAAAGGGGACGAGTCTCATCCAGGGCTCGCTCAAGCCTATCAGCAGCTGTCTAGTGAAGCGGGAGGGAGAGGGCGTCACTACCAGCATGCTCAGGGCCATCCTGGAGATCATTGTTGGAGGAGTTGCCAGCTCACCACAGGATGTGCGGATGTATGCTTCCTGCACTCTGCTGGCAGCCAGTATGGCAACCGAACAACCACATCAGGAAGGAGATGAATCAGAAGCTCAAAACAAAGGGGCTATTGAGGCCTGCATAGAGTGGCTGATGGACAATGAGTTCATACATATACAGAAGGAAAGAGATGTGGAGAGGTACTGCCCCACGCATCTGGGATCTGCAACTCTGTCCTCATCTTTATCACCCCCAGAAGCCCTGGGGATTTTTGCAGATCTTCAGAGAGCAATGAAAGGATTTGTGTTGGAAAATGATCTCCATATCCTCTACCAGATAACACCTGTGTACGTGGACTGGACGACAATAGACTGGTACCAGTTCTTCTGTTTGTGGGAGCAACTACCGTCTGCAATGAAGCGAGTGGCTGAGATGGTAGGCATTCAAGAAGGTTTCCTGGCCCGTTCCGTTAGTGGCAAATTAATTGCTAAAACAGAGAAGCAACGCAGACAGATGGCCATTCACAAACGTTTTTTCACAACATTAGTTCTGCTTGACCTGGTAAGCGAAGAACCACTTGGAGCTGTTGCAAAGAAGTATGGTTGTAGCCGAGGACAGCTTCAGTCACTTCAGCAGTCTGCCTCAACATATGCAGGTATGGTTACGGTCTTCTGTAATCGACTTGGATGGCACAACCTAGAGCTGCTTCTGTCCCAGTTCCAGAGTCGTCTGAGTTTTGGAGTCCAGAGGGAGTTGTGTGATCTGGTTCGTATTTCTTTGCTAAACGCCCAGAGAGCACGTACACTCTACAGCTCTGGGTTTGTCACTGTGGCAGAGTTGGCCAGAGCTGATGTTATAGAGGTGGAAAAGGCCCTTAGGAAAGCTATCCCTTTCAAAAGCTCCAGGCAGGCGGTGGATGAGAGCGAGGTGGAGGCTCAAGAACGCAAGAACATGCGCTGCATCTGGGTCAGTGGGAAAAAGGCCTTGACTGAAAGGGAGGCTGCTCTGCAGATCGTGGCTGAGGCCCGTCTGCTCCTCCAGCAGGATTTGGCGCTTCTTGGGGTGGAATGGAACCCAGCTTCCCTCTCAACAAATATCCAGCCAGATTCCCATTCACCTGAGGAATCATCCAACACAAAACCTCTACAGTCTACATCAAGGGTCCCAGAACATGAAGAGGGTGAAAATGTAATCGCGAATGTTGCCGGACAGAAGTTGGTGGATAAAAGTGCTGACGTTAGTTCCCATCCTCCTTTAAGGCCATTAGAGTTCACTACCAGTTCAGAAAAAACAATGGATATTGACTCAGGTGTGTCATCTGCCAAGTGTCAGCCTGCTAAGAATTGTGAACAGCAATCAAGTGTACTGGATAAAGTTCTCAAATCAATAAATGCCAAAGATAAGGGCTGTCACAATAACCAGACAGCTGAGTCATCGGAATGCTCTTCAGAATCACTTCAAAGGAACTCCAGACATAACTCCTGTCTAAAAAGTACCTGCATCTCCAGCAGTGATCAACATTGTGTAAGTCCAGTTTCGAAACGCAGAAGAATGAATGTTACAGATGCTGAAGCAGGACCCACAGTCTTTGGAGCAAAACCGGCAACTCCTAAACTAATGTCAAAAGCTGAAGAGCTTTACTCTAATAAACCTGAAACTGACTGTAGAATTGATAAAGACAAGATAAAACTCCAATCTTCTACTAATGAACTGAACCAAGACACTGAGTCAAAAACAATTTCTCACTTATGTGCTCCAAAACAGGATGGGGAAGCACCAAATGTCACTGTATTCCCCTCAGATAAAGGGAGAAAGTGCACATCTAAAACAAAACATTTAAATCAGAGCGAAAATGAAACTCAAAATGAAAAACGAGAAACGGTTACTCACAGTTTTAGGAAATTCAGCAGCAGAAATGAGAATGAAGGTGGCTTACATGTGAACACCCGAGTTAAAAATGATTTAGTGTGTCATTCTGAAAAGCTTAGCTCCCCTGATTTGTACATAAATGGATTGGAAGAGTTTGGTGATAGTTTTCAACTCGATACACAGACTGAGAAAATGCTTCAAGGGGATGATTTTTCACATGGCAATTGTAATGTAAACATTATCAAAGAAGATAAACAGGACAGTCATGATGATTCAGCAAGTAACATGAAAGTTGTTAATCAGTCATCTTTCCTGGAAAATGAGAATCATGTGTCTAAAAACCAAAACAAAAACCCAGTCAAAGGTTTATCACCTATTGAGAATGGCCCATCCACTGAAGGAAAACCTAAATATAACATCTCACTTACTGACAGCCAGTTGGAGAATATTTTAAATTACAGTAACCAAGTTGCTGAAAAAGAATCGTATGTAAATAAACCTGCTGAGCAAAGGGAAAATCATGAGTCCTCTGATCATATTACTGACAATAGCTTCAACCGGAGCAGCAGCTTTCTGTTTGACAGTCTCTATGACAACTCCATCTTGGATGCCATGGAGGAAGCAGCAACTGATCGAGAGAACAAAGAAGAGCAGGTGATTGAAACACATGCTAATTCAAATGGCTCTTCTCCAGAACTCATTCCAGAGAGGAGAGATGTTGTGTCAACAGAGGATCAGGAAGCCATCCAATGGGGCGAATCATCTTTCAACCTTTCAGAATGGGGAGATTCGCTACTTATTGGAGAGCAGTATCTTGATAAAATAAACAGTGTTATCAAGGCTTGTGATGGCCCAAGATTGGGTGCAGAGAAGCCCAGCTATACAGATGACATTGTGTCTGAACTACATGTATCACAAAACAATGAGACTCATCCAAAAGTTTCATCTGAAAGACGTCAATTAAACAGTTCATCATTTCACATCAGCCCAGGAATGCAAGACATTTTTGATAAATGGTCTGATCAGTTTTCAACTTTATCTGAGCCTCCAGGGCAGACAAATTCAAATGTGGTGGAACCAAATGCAGCTGCTGTTCTTGTAGAAGAAGCTGTTTCTGTAATAACAAACCATGGAATTGAGCAGGGAGGTCCAAGAAGCGTAAGTACTGAAGATTTTGTGGTAGTCCAGGCCAAACCAGTGACTCCCAATGACCTTGTTCCTCCCACACCAGTTTCTGAACCAGTAACACCACGGGTCAAAATGACCACCTCAGCTGTACAATCACCTCTTAACGTCACCAAGAACAGGTCTGAACTGCATCCAAATTCTAAATCCAGTACCCAGAAAGATTATCAATCTTGTTTGAGGAGAAACTCAGCATCAGAGTTAGACACATCACTGGCTGATGAGGGCTTTACAAGACTTTCTCAGTGTCCATCATTTCCTGCTTCTAACTCCTGTAGTCCAGAAACATTTTCCATAATCGATGTGGCAAGCGATAAAAGGCTTTTCCAAACATTTGTTAAGGAGTGGAAAACAAAGGGCAAATTTTCTATTGCTGTTGCCTGTGAGAAGATAGAGAGCAGCTCAATGACACCTGAGACAGTTATAGGTGGAAAATTCAAAAAATCTACTACCCCAATGAGGAACAAAAGAAAAGATGGCTTCCTCCTGAAGGGATATGAGGATCTTGTTGTCATTGGCATGTCTGTATGCTGGGGCGCAAAAGATGCTTATTTTGTATCTCTACAACAGGAGCTGTCAGACACAGATATAAGTGCCAGTTTAGCTCCACCACCTCTTGATGAGACTCTTACAGTTGAGGAACGACTGAAGCAAATTCAGTGCTGCTTGGAAAAAGAATCGAGTGTGATGGTCACTTATGACTTCATTCAACTTTACAAGACACTTCTCCTGGCGTGTGAGCTTGCTATGCGTGGCACATTTGAAGACCCAAAGGTTGGACAAAACAGAGAAAAATTGTCTATGCTCTCCATCTTCTCAATTATTGAAATCACAAAGATGGATCTGATAGGCTCCAAAGAACGCACCCTCCACAACATGGTGTCCAGCTTCACCCCTGAGGATCTCTCGATGCTTGAGGGAATTAGTCCCGGTCAGGGTGTGCAGAGTTTAGGGATCTATGGAGATGCCAGTCAACCGGGACGTTATAGAGCTACTGTTGAGTCTGTTTTGGTCTTCAGGGTCATGACGCAACTCAACTGTCTTCTTGAAAAGGATGGTTTCTTGGATGTATTCAAGAAAGTGGAGATGCCCACCCAATACTGCCTGGCATTGTTGGAGCTGAATGGAATTGGGTTTAGTGTTGCTGAATGTGAGGCTCAGAAACATGTGATGCAAGCCAAGCTAAGTGCTCTCGAATCGCAAGCCTATCAGCTAGCAGGACATAGCTTCTCACTGACCAGTCCAGAGGATGTTGCAGAGGTGTTGTTTCTTGAGTTGAAGCTGCCTCCCAATGGAGATTTAAATGCTCCAAAGAATAAGAAGACACTGGGCTACACTAGAAGAGCGGGAGCACGTATCAAACTTTCTAAACAGTTCAGCACAACCAAGGATGTCTTAGAAAAGCTCAAGCCATTGCATCAGTTACCAGGTGTTATTCTTGAGTGGAGAAGGATCACGAATGCTTTGACTAAAGTGGTTTTCCCCTTGCAAAGAGAGAAGAAGTGGCACCCACATCTGAAGATGGACAGAATACATCCAATCTCACAGTCACACACTGCCACAGGGCGCGTGAGCTTCACTGAACCAAACATTCAGAATGTCCCAAAAGATTTTGAAATTCAAATGCCAACACTTGTAGAAGAAAGTCAACCATCACAGAATAATGGTGCAAGCAAGACGTGGGGTAAACGATCAAAGATAAACCAGCAATTGGCACCCCTTTTAAAAGTATCAGACAAATCACCAGAAAAAGGGATGCCATTTTCTGTCAGCATGAGACATGCTTTTGTTCCTTTTTCGGGAGGTCTGATTCTAGCTGCCGACTACTCACAGTTGGAGCTTCGCATCTTAGCTCACCTGTCCCGAGACAGACGGCTCCTCCATGTGCTCAACAGTGGTGCAGATGTATTTAAAAGCATAGCAGCTGAGTGGAAAATGGTGGAGCCTGCTTCAGTTGATGATAATATGAGGCAACAGGCCAAACAGATTTGTTATGGAATAATCTATGGCATGGGAGCAAAGTCACTTGGAGAGCAAATGGGCATTGAGGAGAATGATGCTGCCTGTTACATCGAAACATTTAAATCCAGATACACCGGCATTCAGAACTTTCTGCGTGAAACTGTGCAGAAATGTGTGAAAAATGGTTATGTGAAGACATTACTCGGTAGAAAGCGTTTCTTGCCTGGAATAAAGGACTCAAATGTGTACATAAAGTCTCACGCAGAGCGACAGGCAGTGAACACAACCGTGCAGGGCTCTGCCGCTGACATTGTAAAATTAGCAACCATCAACATCCAGCGCCGACTGGAAGCAGCGTTTCCTGGAGTGCCCTCATCACATCGGCACCCTCTAATTCGATCAGGTGGTCGCCACAGAAATCAGTTCAGACCCTCTCGAGGAGGCTATTTTATACTTCAGCTGCATGATGAACTCATCTATGAGGTTGCAGAGGAAGATGTCATTCAGGTGGCCCAGATTGTGAAGCGAGAAATGGAGTGCGTTGTAAAATTATATGTAAAGCTTAGAGTAAAAGTCAAAGTGGGTCCGAGCTGGGGTAACCTTCAAGACCTTGACATATGAAACAAGTCATCTACTGTTTTCATATACACTAATGATAGTGATCATGTTTTACTTTAATGAATTGTTAAAACACTAAATGTGCAGATGTGTTTTTATATATGCAGTAAATATTTTTAATCTAAA

Function

symbol description
polq Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via alternative nonhomologous end joining. Predicted to act upstream of or within DNA-dependent DNA replication. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in oocyte and testis. Orthologous to human POLQ (DNA polymerase theta).

NR:

description
novel protein similar to humna DNA-directed polymerase theta (POLQ), partial

GO:

id name namespace
GO:0003887 DNA-directed DNA polymerase activity molecular_function

KEGG:

id description
K02349 POLQ; DNA polymerase theta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06006532_06022059.mRNA True 9554 mRNA 0.42 30 6004802 6022182

Neighbor

gene id symbol gene type direction distance location
CI01000006_05987812_05989546 NA coding upstream 14265 5987760 ~ 5990537 (+)
CI01000006_05977013_05979433 GUCA1D coding upstream 24912 5976481 ~ 5979890 (+)
CI01000006_05933352_05969576 NA coding upstream 34684 5933174 ~ 5970118 (+)
CI01000006_05903309_05926132 DLAT coding upstream 78670 5903309 ~ 5926132 (+)
CI01000006_05893735_05901666 ZW10 coding upstream 102780 5893531 ~ 5902022 (+)
CI01000006_06038315_06045317 ANGPTL5 coding downstream 16133 6038315 ~ 6045684 (+)
CI01000006_06049283_06057849 TRPC6, TRPC6A, TRPC6B coding downstream 27101 6049283 ~ 6058876 (+)
CI01000006_06095035_06097240 FBXO40.2 coding downstream 72853 6095035 ~ 6097240 (+)
CI01000006_06100199_06103495 FBXO40.1 coding downstream 78017 6100199 ~ 6103523 (+)
CI01000006_06104927_06109730 NA coding downstream 82745 6104927 ~ 6109820 (+)
G43887 NA non-coding upstream 200641 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 213888 5789421 ~ 5790914 (+)
G43903 NA non-coding upstream 230853 5771881 ~ 5773949 (+)
G43942 NA non-coding upstream 561879 5442465 ~ 5442923 (+)
G43934 NA non-coding upstream 576484 5428100 ~ 5428318 (+)
G43970 NA non-coding downstream 50215 6072397 ~ 6072706 (+)
G43988 NA non-coding downstream 87984 6110166 ~ 6110406 (+)
G43990 NA non-coding downstream 98176 6120358 ~ 6120735 (+)
G43908 NA non-coding downstream 129691 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 171987 6194169 ~ 6199969 (+)
G43896 NA other upstream 233027 5770089 ~ 5771775 (+)
G41996 NA other upstream 880653 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2268824 3734554 ~ 3736035 (+)
G41591 NA other upstream 3165381 2836167 ~ 2839421 (+)
G41424 NA other upstream 3344232 2645662 ~ 2660570 (+)
CI01000006_06122278_06122736 NA other downstream 99853 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1144607 7166778 ~ 7168925 (+)
G44872 NA other downstream 1334170 7356352 ~ 7387884 (+)
G45178 NA other downstream 1599809 7607604 ~ 7683671 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016315 NA coding CM030122.1 CM030122.1 15804860 ~ 15824266 (-)