CI01000006_06267132_06269409


Basic Information

Item Value
gene id CI01000006_06267132_06269409
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6267132 ~ 6270057 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06267132_06269409.mRNA
ATGGCGGGTGTTTTATGGATGCTTTTTGTTGTTTTCTGTCCTTTGGTTCTGTCTGAGAGTGGAGATGATGATTGGTCTGAGAAAGAAGTGACCTGCACATCCACTTTGACCCTCAAACAGAGTAAACTCACCTGTTCGCTAAATGATGATCCCATTGAGGAGGTCAAATTCGCAATACTCTGCCAAACTAACAGTAAAAAGCCCATCTGCACTACAGTTCAATATAGGAACTTCAGTATCAGCAAGGACAGACTTGGTGGAGATGGTGTTTACTATACACGTGTTAAAGCAAAACCTCTAGATTATTTTGAAGGCAACTGGAGTGAGTGGAGTTCAACTACCATTTTCACTATAAAAACAAAGAGTACTGAAAGTCTAAAGGTCACTTCACTATCATCGCTTCACATCACCATCGGCTTCTCTGTCTTTCTGGTGCTCATCAGTTTGGGGGCCTTGCTATGGAGAACGCATATAAAAGGCTGCATCACACCAAACATCCCACACCCAAAGGCAACTCTTGCACAAATGCACAGGGCAAGAGAGGGTCTTCCTTTCACTTTCAGTCCTGAGATATTCAGCGATGTTTTCATACACCGCGTGGATTACATTGATGAAAAACCTTCTGATCCTGAGCTTGAGGACAGCCTGAATGAATGCTGCTATAGTCAAACCAGTTCCTCAAATGCGTCAGTGAGTGAAATGGACATGAATGCAGAGGAACGGCTTCCAAGAGAGCAGTCCCACCTGAAAATTAGATTGTTAGATGAATCAGATTTGTCAAAAGGAAGAGAAAATAGTGGCTTTCAGGGTGTAACGGCCCCTCAACGAGAATGTAAAGACGAAGCCTATGTCACTATGTCCAGCCTCTTTAAAACACAATGAAGAGACCAGTTAAGACAATTCCAGTTTACTGGTGATTTTACAGACCCTCGGTAGAGGATGTTATTCTGCGTACATGATATAAAAGTTTAACTAACATTGTATATGATGCATTTAATAACCCAAGAAACCTGTTATGTATGACAAGATGCTTTTACATGTCACTAGGCTTGTCCAGTTTGTAGCTCTGACGCTGTTTGTACGTCTTAGCACTCATCCACAGGTTTCATTTTCAACCAAGCATCATGCACTGCTGTCGTCTCCATTTTGGTAGCCAATTTCCTTCTGAATGTTTCAGAAACACTTTAGACAGAAGCATTAAGTGTGAATTATTTCTGAACTCATCACACATATACTCAGACCTCATGTAACTGCTGCTAGCCTCAGTGTCCTCTGCCAGACATGTTTCCATGGATATTTTCATCCGTATATCTACCTGAGTAAAGCTGAGAGATTTTAATGCTGTTAACCTCACGCACAACTCTCAAAAGGAATGCATACAGTTCAAGCGGCACTTTTTCAATGATCAGAGGATTAATTTATAATGATCAGAAGAAATATTTTCTGTGTATATAAAAAAGCATCTGCTCGTAATGCTAATTTTGTAATGCATTTATCATTATATATATATATATATTAAACAGGTGTGTA

Function

NR:

description
TPA: interleukin 7 receptor alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06267132_06269409.mRNA True 1530 mRNA 0.40 7 6267132 6270057

Neighbor

gene id symbol gene type direction distance location
CI01000006_06225846_06258303 MYO5B coding upstream 8617 6225846 ~ 6258515 (+)
CI01000006_06201072_06204390 CFAP53 coding upstream 62437 6201072 ~ 6204695 (+)
CI01000006_06192438_06193928 NA coding upstream 73128 6192438 ~ 6194004 (+)
CI01000006_06171151_06179449 PVRL1A coding upstream 85757 6171151 ~ 6181375 (+)
CI01000006_06146799_06148260 NA coding upstream 118727 6146729 ~ 6148405 (+)
CI01000006_06289413_06296642 NA coding downstream 19242 6289299 ~ 6297106 (+)
CI01000006_06304760_06308641 SKP2 coding downstream 34122 6304179 ~ 6309263 (+)
CI01000006_06319924_06332207 NA coding downstream 49867 6319924 ~ 6332207 (+)
CI01000006_06432698_06437087 SLC35F2 coding downstream 162039 6432096 ~ 6437592 (+)
CI01000006_06438579_06447777 ELMOD1 coding downstream 168522 6438579 ~ 6449161 (+)
G43904 NA non-coding upstream 67163 6194169 ~ 6199969 (+)
G43908 NA non-coding upstream 112405 6151873 ~ 6154727 (+)
G43990 NA non-coding upstream 146397 6120358 ~ 6120735 (+)
G43988 NA non-coding upstream 156726 6110166 ~ 6110406 (+)
G43970 NA non-coding upstream 194426 6072397 ~ 6072706 (+)
G44009 NA non-coding downstream 2881 6272938 ~ 6273227 (+)
G44010 NA non-coding downstream 4948 6275005 ~ 6275234 (+)
G44012 NA non-coding downstream 15591 6285648 ~ 6285875 (+)
G44035 NA non-coding downstream 117658 6387715 ~ 6390438 (+)
G44053 NA non-coding downstream 151873 6421930 ~ 6424506 (+)
CI01000006_06122278_06122736 NA other upstream 138457 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 157544 6104927 ~ 6109820 (+)
G43896 NA other upstream 495357 5770089 ~ 5771775 (+)
G41996 NA other upstream 1142983 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2531154 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 896732 7166778 ~ 7168925 (+)
G44872 NA other downstream 1086295 7356352 ~ 7387884 (+)
G45178 NA other downstream 1351934 7607604 ~ 7683671 (+)
G45265 NA other downstream 1613810 7883867 ~ 7920355 (+)
G45336 NA other downstream 1749285 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019567 il7r coding NC_007132.7 CM002905.2 22429509 ~ 22435957 (-)