Gene
RNA
| Item | Value |
|---|---|
| gene id | G51185 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 2038469 ~ 2045644 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58309 | True | 7156 | lncRNA | 0.36 | 2 | 2038469 | 2045644 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_01993176_01999494 | MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 | coding | upstream | 38596 | 1993176 ~ 1999873 (+) |
| CI01000009_01990700_01991267 | HSP10, HSPE1 | coding | upstream | 47082 | 1990700 ~ 1991387 (+) |
| CI01000009_01966898_01976924 | COQ10B | coding | upstream | 60735 | 1966898 ~ 1977734 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | coding | upstream | 118953 | 1897343 ~ 1919516 (+) |
| CI01000009_01892219_01893628 | NA | coding | upstream | 144715 | 1892219 ~ 1893754 (+) |
| CI01000009_02233367_02235148 | RABL3 | coding | downstream | 187723 | 2233367 ~ 2235793 (+) |
| CI01000009_02284485_02285584 | NA | coding | downstream | 238841 | 2284485 ~ 2286129 (+) |
| CI01000009_02375481_02385887 | NA | coding | downstream | 329432 | 2375076 ~ 2386001 (+) |
| CI01000009_02398010_02399639 | NA | coding | downstream | 350421 | 2396065 ~ 2399752 (+) |
| CI01000009_02426085_02433745 | CNGA4 | coding | downstream | 379931 | 2425575 ~ 2433795 (+) |
| G51228 | NA | non-coding | upstream | 14010 | 2024109 ~ 2024459 (+) |
| G51175 | NA | non-coding | upstream | 77752 | 1959260 ~ 1960717 (+) |
| G51216 | NA | non-coding | upstream | 85106 | 1953141 ~ 1953363 (+) |
| G51183 | NA | non-coding | upstream | 112750 | 1880934 ~ 1925719 (+) |
| G51198 | NA | non-coding | upstream | 157559 | 1880711 ~ 1880910 (+) |
| G51238 | NA | non-coding | downstream | 53634 | 2099278 ~ 2116721 (+) |
| G51261 | NA | non-coding | downstream | 106243 | 2151887 ~ 2152387 (+) |
| G51311 | NA | non-coding | downstream | 165439 | 2211083 ~ 2211312 (+) |
| G51294 | NA | non-coding | downstream | 181250 | 2226894 ~ 2227459 (+) |
| G51267 | NA | non-coding | downstream | 182010 | 2227654 ~ 2229104 (+) |
| G51122 | NA | other | upstream | 356503 | 1680146 ~ 1681966 (+) |
| CI01000009_01431700_01434463 | NA | other | upstream | 600114 | 1429873 ~ 1435328 (+) |
| G50920 | NA | other | upstream | 1268236 | 769841 ~ 770233 (+) |
| CI01000009_00094836_00095813 | NA | other | upstream | 1942682 | 94371 ~ 97230 (+) |
| G51274 | NA | other | downstream | 209455 | 2255099 ~ 2350486 (+) |
| G51529 | NA | other | downstream | 1016389 | 3062033 ~ 3062587 (+) |
| CI01000009_03202999_03207060 | MPC2, MPC2.S | other | downstream | 1157128 | 3202207 ~ 3208984 (+) |
| G53388 | NA | other | downstream | 3476598 | 5522242 ~ 5540638 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | downstream | 3814658 | 5931718 ~ 5943899 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
