CI01000009_02398010_02399639


Basic Information

Item Value
gene id CI01000009_02398010_02399639
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2396065 ~ 2399752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02398010_02399639.mRNA
GTATAAAAAGAGAAGTTGACTAAGGTTGCCACGGTCAATGTCTTTCCTATGCTAATTTAGAAAACTGGAGATACACCATTGCATTACAAATGTGAACAGTCATTTGCATAATTGTAACAATACATGCTAAGTCATCTGATATGGTGCATGTGTTTGTGTGTTCTCCAGTGTCTTCTGTATCCTCTCATATTACTTCTTACATTATCTATGAGGGGTTGCTGCAGATGAACTCTGCGTAATGGCTTTGCACAAGGAGGACAGTGAACAAAAGTAAAAGCAACTATTTTTAGTGTACAAATAACCATTATCAAATGAAATCTTTATCTTTAGGCAAAAGCAATCAAGTAAAAGGACTATTACACTAAACAAACTGCAAACTGGCAGTGCCAGATAACAATATAAATCATTTCCAACTTATTATTTATAACAAAATAAACATAACGTAAGCAATTCACAATTATATCCATTAACTGTACTTTAAAAGCATTGTGAAACATTTAAAACTATTGTATTTACGACAATTTACAATTTAATTGGTCATTAAAAAAAAAAAATTCTAAAGCGTTGTTCAACCCAAAACTAACCAGAAAAAAAAAAAACTTGGTATTTGACTGTTTATTACTAATCAAAAAAAAAAAAAAAAAGGTCTTCAATTATAAAAATTGAATTAAAGTCGAAAGTCTTACCTGTGTGTCTTTCACCTACTCCTTTGCTACTGCCCTCCTGTCTCTCACGCAGTTTTTTTCCCCCTCTTGCTAGTTGTCTCACTGTTGCTAGGAAACGGTACAAAACTAATTCAATTAAAGGATTAGTCCACTTTCAAATACAAATTTTCTGATAATTTACTCACCCCCATGTCATCCAAGATGTCCATGTTCTTTTCTTTCATCAGTCGAAAAGAAATTAAGGTTTTTAATGAAAACATTCCAGGATTATTCTCCTTATAGTGGACTTCAGTGGTCTCCAAACGGTTGAAGGTCAAAATTACAGTTTCAGTGCAGCTTCAAAGGGCTTTAAACGATACCAGACGAGGAATAATGGTCTTATCTAACGAAACGATTGGTCATTTTCTTAAAAAAAAATACAAATGTATATGCTTTATAGGCACAAATGATCGCCTTGCAAGTGCTTCGCCATTCCGCTTTCTGTATTCTTCAAAAAGCTTACGCTGTATGTCCTACGCCTTCCCTATTCAACTTACGGAAAAAACGGAACTGGCTCCGCGTTCGTTCCGTAATTTGTGTTTATAAAGCATATACATTTGTATTTTTTTTTTTTTTAGATAATGACCGATTCGCTAGATAAGACCATTATTCCTCGTCTGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCGTTCGGAGGCCATTGAAGTCCACTATAAGGAGAATAATTCTGGAATATTTTCATCAAAAACCTTAATTTCTTTTCGACTGAAGAAAGGAGGACATGGACATCTTGGATGACATGGGGATGAGTAAATTATCAGGAAATTTTTATTTAAAAGTGGACTAATCCTTTAACTACCAGTAATCTTGGTGTCTGCAACGTAGAATTTCAGGGGCTTCATGGAATCTGCATGGAATTTGAATGGCCATCATCAGTTCTACACTTCTCCTGCACTTTATATGTTCATTACAGCAAACAATATATTGCAAATTTAAGTTTCAAATGTATAGACTAATGGTATGCCATTTATTATTATCATTATTATTATTATAAATTAAGTTTAATTTTTATATATATATATTTTTTTACTTTATAAACTTTAATTAATCACGCATTTATTTACATAAAAAATGGGCAATAAAGCACTTGTCTTAGCTCATGGAAATGCACATTTCTGTTAACTGACTACTGAGACTGATCTGACATGAGAAGAGAAATAGCCAGCTCCATGAGTCACATGTCTAATCAGCAAAATGGCAATCATGTGGGAGTTTGTGGACCTTTGGCTGTATATCAAAGTGTGCTCTTCACACTGTACATCTATGAACTTAAAACAAGTCTATGCACCAACCAAAGTGAACCAGAGACCAGATTCATCAAAGAAAAAATATTTTGCTGAAGCCCAAGCAACAGATCAGAAAAAGGCTGAAGTGTATATTCAGGAAATGTGATTTTGTTCATATTTCGCATATTTTTTGACCATTTTGTCTAATGTATTTGCAATCAACTACACCATTTCAAACCATAAATAATAGAGGATCTCACCTTTATAAACTCATGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02398010_02399639.mRNA True 2256 mRNA 0.34 2 2396065 2399752

Neighbor

gene id symbol gene type direction distance location
CI01000009_02375481_02385887 NA coding upstream 10064 2375076 ~ 2386001 (+)
CI01000009_02284485_02285584 NA coding upstream 109936 2284485 ~ 2286129 (+)
CI01000009_02233367_02235148 RABL3 coding upstream 160272 2233367 ~ 2235793 (+)
CI01000009_02028234_02100154 PLCL1 coding upstream 295911 2028234 ~ 2100154 (+)
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding upstream 396192 1993176 ~ 1999873 (+)
CI01000009_02426085_02433745 CNGA4 coding downstream 25823 2425575 ~ 2433795 (+)
CI01000009_02449805_02450173 NHLH2 coding downstream 48245 2447997 ~ 2450356 (+)
CI01000009_02479541_02488142 VANGL1 coding downstream 79789 2479541 ~ 2488759 (+)
CI01000009_02499173_02519062 DOPEY2 coding downstream 99217 2498969 ~ 2519155 (+)
CI01000009_02572388_02587828 USP9, USP9X coding downstream 172636 2572388 ~ 2588051 (+)
G51358 NA non-coding upstream 27651 2368182 ~ 2368414 (+)
G51265 NA non-coding upstream 32894 2242709 ~ 2363171 (+)
G51347 NA non-coding upstream 72208 2323267 ~ 2323857 (+)
G51318 NA non-coding upstream 153733 2242125 ~ 2242332 (+)
G51267 NA non-coding upstream 166961 2227654 ~ 2229104 (+)
G51270 NA non-coding downstream 26 2399778 ~ 2400894 (+)
G51272 NA non-coding downstream 1281 2401033 ~ 2401367 (+)
G51354 NA non-coding downstream 15948 2415700 ~ 2425283 (+)
G51368 NA non-coding downstream 28370 2428122 ~ 2428322 (+)
G51384 NA non-coding downstream 154987 2554739 ~ 2621187 (+)
G51274 NA other upstream 45579 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 494639 1897343 ~ 1919516 (+)
G51122 NA other upstream 714099 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 957710 1429873 ~ 1435328 (+)
G50920 NA other upstream 1625832 769841 ~ 770233 (+)
G51529 NA other downstream 662281 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 803020 3202207 ~ 3208984 (+)
G53388 NA other downstream 3122490 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3460550 5931718 ~ 5943899 (+)
G53651 NA other downstream 3845812 6245564 ~ 6248392 (+)

Expression


Co-expression Network