CI01000009_02375481_02385887


Basic Information

Item Value
gene id CI01000009_02375481_02385887
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2375076 ~ 2386001 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02375481_02385887.mRNA
ATATATATAAAAGGTGCTATACAAATAAAACATATAATAATAATATTATTATTATTATTATTATGACTTGTTTCTGCATATTAAACTGGGTTAGGAGAAAGTATTTAAACAGTGACAGAATTACACCCTTCTCCTTCAGCTTTCTGTTTGTTTTGTCTTACAGGGCTTCTGACTAGCAGCATGACTCGAACCTACGGGATTGCAAAATACAAACACACCTGCAGCCAACAGTTATCTGAGGACACTCTCTCTGACTCGCCAATCCGGAAACCTTTCAATTTGCATATAGCCCAACGCAGCCCTCTGCTCTTTCTGTGTTAACTGCAAGCATTAAAGGTTTAAAGAGATTCTAAGAGCACCTGCTTCACTTGTTCTGTAAGGGACTATGGAAGAAGGTACATCCTCATGGTCCATCCCTGTTCGTCTCCAGAGAGCCAGATGAGGAGCATGTTACCCAGCTTGTTACGGGGCCGGCGATTCTACTGCCGTGAATGGGCCCTCGAGAAGCTACAAAGATGCCTGGAGGCGAGAGATGCCGCCAAGGCCGTAGAGGGAGCAATCCGTGTCTCTCCAGGGGTCCTAGTGACTGGGGGCCCAGGCACGGGTAAGACGGCCCTCTGCACAGAACTGGTTTGGCCTCAGTCGGAAGCATGTAGGGCGGCAGGGTTGGCATCACGGTGTTTGGCCTGGCACTATTGCCAGCGAGAGGATGCGGGCAGTATTGAAGTGTGGAGATTTGTACTGGGGCTGGTTGAACAGCTGAAGGAAAGTCCACTTCTGGGACCAAACTATATGAAAGTCATTAGCAGTGCTGCTATTGCCGCTGTCCTGGAGCCCCTCCACTGCCAAAGAGCACCTGATGACACTTTTAAAAGGGCAGTGTTAGAGCCCCTCATGTCCTTGACACCACCAGCTCAAAGTGTGTTTATTGTGGTGGATTCAGTGGACTCAGGGTGTTGTGGAGGTAATGGAGTTGGAGAACAGTCAATGTCAGGATCTGCGGACACTCAGAGTTCCTCTATTACAGAGCTCCTGCTCAGATACATTCAGCTCCTGCCCCCCTGGATCTTGCTGGTCTGCTCTGCTCGCCGACAGAACAAAGCCATTTGCAAGATGTTCTCAGGTTTTAGGAGGTTGTGTCTGGATGACTTAAGAAAGCCTGCAACTGTACGAGATGTACAGCAATATATCCTGCGGAGGCTTGACCAGGATGGGGCTTTGAGAAGACAACTTACACCAGAGACGGCTGAAATGCTTAATCTTTTGCACATCAAAAGTGGTGGCTGTTTCTTGTTTCTTGAACGAGTGCTAGATGGTGTTGCACATGGTCTAGTAGGACTTCGAGAAATTAGGGACATTCCTGGCACACTGAATGGCCTTTACCTATGGCTCTGTCAGCGACTCTTTCCTCGAAGGCTGTTTGTCCATATTAGGCCTTTGCTGAATATCCTTTTGGCATCCCCACATCCACTAACAGCTGAGCAACTCTACATTATTGCTAGAAGCCGTGACTCCTACCTTGGGATTGGAGACTTCCAAGCACAGATGGGTCCTCTGGCATCTCTGCTTGTAGATGGCCCTGAGGGCAGTAAACTCCTCTTTCACAGCAGCTTTGCAGAATGGTTAACTGATGTCAAATACTGCACACAGAAGTTTTTGTGTTGTGTGAAGGATGGTCACCTTTCTCTGGCCATGTCCCTCTCTTTTCTAGCCAGTAGTTTGGGTACAGAGGAGACTTGCCAGCTGGCCCACCACCTCCTCAACAGTGGAGTCCATCAAGGGGAGCCAGCCCTCTTGGCACTGTGGTTGCTATGGACTGGAGTTCCATCTCTTAATGGTGCCAGAAAAGACTGTTCTTCTAATATGCCATCACCTCCTCATACACCTGTACTAGTTCAGCAAGATGTACTACAGCTCTTAATGAAAAGCGGAATTTACCCTGCAAGCTGTTCCCCCGACAATAGCTCCAGTGTGGGGGTTCACTGTGTTGGGGGAGGAGGCAGAATAGTTCGACGAGCATTACAGAGGGAAGACTCTGTGAGAGCTCTTCTTGACAGTGGCATCAGCGTGAACCGCACAGACCCATCAGATGGACGGACTTTACTAGCAGCTGCAGCCCATGCTGGACTTGTAGATGTAGCTGCGTTGCTGTTATGCCGAGGAGCAGACCCTTCACTGAATGACAACCAGGGGCAGACTGCACTGACGCTTGCTGCCAGACAAGGTCATGTTGGTGTACTGAAGTTGTTGCTGGAGTGGGTGCAGAAGCAAGGGAGCAAGAATCCTGCAGCACAGACCCTGCTGGAACATGTGGACAGTGAGGGATGGACTGCTCTTCGCTCTGCTGCATGGGGTGGCCACAAGGAAGCTGTGCGTCTACTTCTGGAAGCTGGGGCAGAGATTGATGGGTGCGATTCAGATGGCCGGACAGCCTTGCGAGCAGCAGCATGGGGTGGACATGAGGAAATTCTGTTGACCCTCCTTAAACATGGTGCTGAAGTAGACCGTTCTGACGGTGAGGGACGTACTCCGCTAATAGCTGCAGCCTACATGGGTCACAAAGAGGCAGTGGAGATCCTTTTGGATGCTGGGGCTGATTTGAATCTTGAAGATGGGGATGGACGTACTGCTCTCTCTGTTGCTGCATTGTGTGTGCCGTCAGCAGCTGGAGGACGAGGGCATGGAGAGGTTGTAAATCTTCTGTTAGAGCGAGGTGCTGATCCGGAACATAAGGACAGAGATGGAATGACCCCTTTACTACTAGCCTCTTACGAAGGGCACGAGGAAGTGGTTGAACTCCTCCTGGAAGCTGGAGCTGATGTAGATGAAAGTTCTGGAGCACATCCCTCTGCTGTCACTCCTCTTCTTGCGGCTGCAGCTATGGGACATGCTGGCACAGTTAATCGTATGCTGTTTTGGGGGGCAGCAGTGGATGGCATTGATGGAGAAGGCCGCACCGCTCTCTGCTTGGCTGCAGCAAAGGGTAGCGTCGAAGTTGTAAGAGCACTGCTGGACAGGGGTTTGGATGAGAATCATAAAGATGACCTGGGCTGGACTCCACTGCATGCTGCAGCTTGTGAAGGTCACAAAAGTGTGTGTGCAATATTGACAGAGCGAGGTAGCATGGCACGTGTGGGTGAGCTTGATGTAGAGGGTCGGAGCCCTCTAATTCTGGCAGCACAAGAAGGGCACTGTAGTACAGTCAGACTGCTTCTAGACCGAAAGTCACCCATTGATCATCGTGCATATGATGGACACTCTGCACTCAGTGCGGCTGCTCTGCAGGGACATCGGGAGATTGTGGAGCTATTGATGCGGAGAGGGGCTGATACTGATGTCCGTGATGCTGAAGGAAGACCTCTTCTTTATTTGCTGGTCCTGGAGGGCCGTTTAGACATGGCCACCCTACTTATAGAAAAAGGTGGTGTCCCTCTGGAGTCAAAAGATGCAGAAGGGCGAACTGCACTCCATGTAGCAGCTTGGCGAGGAGACCTGGAAGGTATTGAACTGTTGCTGAAATATGGAGCTGACCCAAATGCAAGAGATCTTGATGGTCGGCCTCCTTTGCACTCTGTGGCATGGAGAGGTCATGCAGCTGCTGGCAGGCTGCTCCTTAAGGCTAAAGGTATCAATGTAAACCTGGCTTGCAAACAGCAGGGTGCCACAGCGCTTAGCATTGCTGCTCAGGAGGGGCATGCTGAAATTGTGGCCATGCTCTTAGAAAAAGGTGCAGAACCAGACAATGTGGACCGTTATGGTCGCAGCCCAGTAAAGGTAGCAGGAAAACAAGGTCATTTCACAATTGTACGACTTCTGGAGAGCTATGGTGCAAAGCCCTTTTCAGGTCTCATACCGTTTTCACCCAGTGGTGCTCCCAACACCTCTTACCTTTCAGCCATAGTCAAGACCCGTGCGTCCCTTTGTTCAGGAGAGCTTCGACTGCAGAGCGTTTCCACTCCATGCCTGCCTCACAGACTTCCTCCTCCACCTGCCACTCCCAGACCACCGTACAGACCGTGCCTGCTGACAGTCTAAATTTCATCCAGCAGATACAACAACATTCACTTCCTCGTTGCCGCAGTCGGCCATCCACCTTGCCTCTTCCTGGCTCCAATCCTGCCAGTCTTCAGGGCAGAGCATCTAGGCATA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02375481_02385887.mRNA True 4149 mRNA 0.51 4 2375076 2386001

Neighbor

gene id symbol gene type direction distance location
CI01000009_02284485_02285584 NA coding upstream 88947 2284485 ~ 2286129 (+)
CI01000009_02233367_02235148 RABL3 coding upstream 139283 2233367 ~ 2235793 (+)
CI01000009_02028234_02100154 PLCL1 coding upstream 274922 2028234 ~ 2100154 (+)
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding upstream 375203 1993176 ~ 1999873 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding upstream 383689 1990700 ~ 1991387 (+)
CI01000009_02398010_02399639 NA coding downstream 10064 2396065 ~ 2399752 (+)
CI01000009_02426085_02433745 CNGA4 coding downstream 39574 2425575 ~ 2433795 (+)
CI01000009_02449805_02450173 NHLH2 coding downstream 61996 2447997 ~ 2450356 (+)
CI01000009_02479541_02488142 VANGL1 coding downstream 93540 2479541 ~ 2488759 (+)
CI01000009_02499173_02519062 DOPEY2 coding downstream 112968 2498969 ~ 2519155 (+)
G51358 NA non-coding upstream 6662 2368182 ~ 2368414 (+)
G51265 NA non-coding upstream 11905 2242709 ~ 2363171 (+)
G51347 NA non-coding upstream 51219 2323267 ~ 2323857 (+)
G51318 NA non-coding upstream 132744 2242125 ~ 2242332 (+)
G51267 NA non-coding upstream 145972 2227654 ~ 2229104 (+)
G51270 NA non-coding downstream 13777 2399778 ~ 2400894 (+)
G51272 NA non-coding downstream 15032 2401033 ~ 2401367 (+)
G51354 NA non-coding downstream 29699 2415700 ~ 2425283 (+)
G51368 NA non-coding downstream 42121 2428122 ~ 2428322 (+)
G51384 NA non-coding downstream 168738 2554739 ~ 2621187 (+)
G51274 NA other upstream 24590 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 473650 1897343 ~ 1919516 (+)
G51122 NA other upstream 693110 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 936721 1429873 ~ 1435328 (+)
G50920 NA other upstream 1604843 769841 ~ 770233 (+)
G51529 NA other downstream 676032 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 816771 3202207 ~ 3208984 (+)
G53388 NA other downstream 3136241 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3474301 5931718 ~ 5943899 (+)
G53651 NA other downstream 3859563 6245564 ~ 6248392 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location