CI01000009_02028234_02100154 (PLCL1)


Basic Information

Item Value
gene id CI01000009_02028234_02100154
gene name PLCL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2028234 ~ 2100154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02028234_02100154.mRNA
ATGTCGGAGTCTTACGAGGACGGGGTGTGCGGAGATGGAGCTCCGGACTTCATCCCACCGAGAGCGATTCGATCAGGCCGGCGGAGTGGAGTCAGCGTGCCGCTGGTGGAGCGCGATGAGGCGGCTCTCCTGGAGTCAGTGAAAATGGCACCGAGGAGGAGCAGCATCATTAAGGACCCTTCAGTGGCCAAGGTCAGTGGTGGGAGGAAGAAAACGGTTTCCTTTAGCAGTATGCCATCAGAAAAGAAGGTGAGCAGTGCTGCAGATTGCCTTGCTTTCATGCAGGGTGGCTGCGAGCTAAAGAAGGTACGACCCAACTCACGCATCTACTCGCGATTCTACACTTTGGACACGGAGCTGTCCTGCCTTCGTTGGGAACCCTCCAAGAAAGATGGTGACCGAGCCCGACTTGACATCTCTGCCATTCGTGAGGTCCGCACAGGGAAAAGCACAGAGACCTTCCTTCATAATGGCCCATCGGATCACCTGGCTGAAGAAGCAGCCTTCTCCATCATTCATGGTGACGAGTATCAGTCTCTGGACCTGGTTGCTCTCTCTGCCGATGTGGCCAATATCTGGGTGACAGGGTTGCGGTACCTATTGTCTCACCCTGGTGCCATTGGAGGAGGGATTGGAGGGGATGGAGGGGTGGGAGAGGCCAGCATTGGAAGCAAGATGAGGCGGAACTGGTTGGCGACAGAGTTTGCTCTGGTTGATGAGGATGGACACGGAATTGTGTCTGAAGATACGGCAGTGGCCACCATCTGTAAACTCAGCCCTGGCATTAAGGAAGCAAAGGTGCGTTTACGCTTTAAGGAAATTCAGAGGAGCAAAGAGAAGCTAACATCTCACGTTACCCTGGAAGAGTTCCAGGAGGCCTACTGTGAGTTGTGTACACGACCTGATGTCTATTTCTTGCTAGTGCAACTCTCTAAAGACCGAGAGTGCCTTGACGCTCAGGACCTGCGTCTGTTCCTGGAGACGGAGCAAGGTCTGTCATTGGCCACCACTGAGGGCTGCTTGGAGCTTCTTCGCCGCTTTGAGCCCTCTGCAGCTGGACGTGAGCGAGGTTTACTGGGCTTGGATGGCTTTACCCGCTACCTACAGTCAGCTGAGTGCCAGTTGTTAGACCCTGAGCATCAGAATGTGTGCCAGGATATGAAGATGCCCCTGTCTCATTATTTCATCAGTGCCTCCTACCGCTCCTACCTGCTGGATGACCAAGTGCATGGCCGGGCTGATCTTGGGGGGCTCACTCGGGCCCTGCAGGCTGGCTGTCGGTGTCTGGAGCTGGGGGTTACCGATGGGCCAGAAGGGGAGCCACTATTGGGTGTAGACCATGAAGTAGTCAACAAGTATGCTTTTCTCACCTCCCAGTATCCTCTGCTGCTGTATCTATGCCAGCGTTGCTCACCTTCCCAGCAATGTACTCTTGCGCAACACCTAAAAAAGGTTTTTGGATCCAAGCTCTATACCCCTGAATCTCTACCTGTCAGTCTGGGAGGTCGCGCAACCACTTTGCCCTCTCCAGAGCAGCTAAAGGGTAAGGTGCTTCTTGTCGGAAAGAAGCTACCTCCAGAAGAGGAAGATTCTGAAGGAGAGGTATCTGAGGAGGATGAGGAGATTGGTGGCGGTGGTCCACTGGCTGGCCGAAGGATGACTATCCCTGGGGAAGAGGAACTAGGGGTGGTCCTTGTTGTTCCCCCACCCCCACAGCCAAGGCGCCTCCGTTTGCGGCGTGAATTGTCCGATCTCGTTGCAGTTGCTCGTACCGGAAGTCGTAACTTTTATGCTTACCGGGCGAGTACTCAGCAGTCCCAGCAGCATTCTCCCCCTTCTACTCCTTCTACACCTGGTACACCTATGACCCTTGACCCCCCCTGCTGGACCCTGTGCTCTCTCGGGGAAGGGGAGGCAGGACGGCTGGCTAGCGAGAGCCCAGAGGAGCTTGTGTGCTTTACCAAGCGCAATCTAACCCGTGTCCGGCCCAGCTCAGTAAGGCTAGACTCTAGCAACCCAAACCCGCAAGGCTACTGGAAAGGAGGTGTGCAACTGGTTGCGCTTAACCAACAGACACCAGGTGCCATGCTAGACCTGACCCGTGGCCGTTTTATGCAGAACGGTGGGTGTGGATATGTGCTTCGTCCAGCAGTCATGCGAGAGGAGGTTTCCTACTTCAGTGCCCAGTCACAAGGCTGTGTGCCTGGCGTACCACCGCAAACACTCAGGGTGAAGGTCATTAGTGCCCATAGTCTACCCAAGCCACAAGGCTCTGGTGCCAAAGGTGAGGTCATCGACCCATATGTGGTGCTGGAGCTGCATGGTGTGCCTTCAGACTGCACAGAACAGAGAACTCGCACTGCTGCCCAGAACCAGGATGACCCACTGTTTGATGAAACCTTTGAGTTCCAGGTGAACATGCCTGAACTAGCCCTGCTGCGTTTCGTAGTTCTGGATGATGATTATATAGGAGATGACTTCATTGGCCAGTACACCATCTCCTTTGAGTGTCTACAGCCTGGTTACCGCAATGTGCCCCTTATGGGCCTCGCTGGAGACCCTTTGCCCCATGCCAGCCTGTTTGTACACGTCGCTATCACTAACCGCAGAGGTGGGGGAAAGGCCCAGAGACGGGGTCTGTCCGTCAGGAGAGGAGCGCGGCGTGGAAGAGAGTACGTCACCCTGCGTAACACGGGCATCAGAGTGCTGGATGACACTTTCCGCCCAGCCAGCGGACCTCTGCGAGAGGCTACAGACCTGCGAGAGGATGCGCTGAGCGCTACAGTGGCTTTTAAAGAGCAGTGTGGGCTCCCCCCGATGGCCACACCGAAGCAGTGCATCCAGAGCTTGGCCACGAGGTTGCAGACTCCAGACGGGCCCCCAGGGGCCACACTCATGCTGAAGGAAGGTTACCCGTGCCTGGAACCTGTGGGCAACTTGACTGACGCCACTCGTAAACTGCTAAATGGTTATGACACGATGGTTTCTGCTAACAGACAGCTGATTGAAAATGCAGATGGAGTGCAGGAGAGAATCGCACAAGTGCAAAAGGAAGGAATGGTGCTTCACGAAGACCTGCCCAGGTTAGGAGAAAAGGAAAATCTGAAAGGCCGTAAACAAAGTAAAGCTGTGGAAAGTTTCACTTGGAACATCACTGTGCTGAAGGGTCAGTGTGACCTCCTGCGCAGTGCTAAGATAGATGCTTTGGATACGTTGAGGCAGCTGGCATTGGCCTGTGAGGCATCCGGCCTGATCATGATCTCTGACGGTCCGTACACCCCTCATGGCCTGTCCTCCAGACGTGCCAGTAGCCATGGCAACGGTCGCATC

Function

symbol description
plcl1 Predicted to enable GABA receptor binding activity; inositol 1,4,5 trisphosphate binding activity; and phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction; lipid catabolic process; and regulation of GABAergic synaptic transmission. Is expressed in hindbrain; lateral line nerve; and spinal cord. Orthologous to human PLCL1 (phospholipase C like 1 (inactive)).

GO:

id name namespace
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K15375 PLCL1, PRIP; inactive phospholipase C-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02028234_02100154.mRNA True 3330 mRNA 0.55 9 2028234 2100154

Neighbor

gene id symbol gene type direction distance location
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding upstream 28361 1993176 ~ 1999873 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding upstream 36847 1990700 ~ 1991387 (+)
CI01000009_01966898_01976924 COQ10B coding upstream 50500 1966898 ~ 1977734 (+)
CI01000009_01897343_01919208 PIKFYVE coding upstream 108718 1897343 ~ 1919516 (+)
CI01000009_01892219_01893628 NA coding upstream 134480 1892219 ~ 1893754 (+)
CI01000009_02233367_02235148 RABL3 coding downstream 133213 2233367 ~ 2235793 (+)
CI01000009_02284485_02285584 NA coding downstream 184331 2284485 ~ 2286129 (+)
CI01000009_02375481_02385887 NA coding downstream 274922 2375076 ~ 2386001 (+)
CI01000009_02398010_02399639 NA coding downstream 295911 2396065 ~ 2399752 (+)
CI01000009_02426085_02433745 CNGA4 coding downstream 325421 2425575 ~ 2433795 (+)
G51228 NA non-coding upstream 3775 2024109 ~ 2024459 (+)
G51175 NA non-coding upstream 67517 1959260 ~ 1960717 (+)
G51216 NA non-coding upstream 74871 1953141 ~ 1953363 (+)
G51183 NA non-coding upstream 102515 1880934 ~ 1925719 (+)
G51198 NA non-coding upstream 147324 1880711 ~ 1880910 (+)
G51261 NA non-coding downstream 51733 2151887 ~ 2152387 (+)
G51311 NA non-coding downstream 110929 2211083 ~ 2211312 (+)
G51294 NA non-coding downstream 126740 2226894 ~ 2227459 (+)
G51267 NA non-coding downstream 127500 2227654 ~ 2229104 (+)
G51318 NA non-coding downstream 141971 2242125 ~ 2242332 (+)
G51122 NA other upstream 346268 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 589879 1429873 ~ 1435328 (+)
G50920 NA other upstream 1258001 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1932447 94371 ~ 97230 (+)
G51274 NA other downstream 154945 2255099 ~ 2350486 (+)
G51529 NA other downstream 961879 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1102618 3202207 ~ 3208984 (+)
G53388 NA other downstream 3422088 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3760148 5931718 ~ 5943899 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location