G51175


Basic Information

Item Value
gene id G51175
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1959260 ~ 1960717 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58297
TCCTTCTGTTCTTCTGGACTGAGGGTGGACTCATCAACTTCAACCAGCAGTTTGTCAAAGTACTGGATGTCATCTGGCTTGAGGAAGGGCAGGTTTCCAGAGGGCTGGTCATTGACTTGTTTCATAGATCTGTCCTCTGTTTGCATGTGGAAGCCAGTCATTCCTCCGATGGGGGTGGGAGTGGCAGCTAGCTTACGCGCAGGGGTGCGGATGGGCACGTAGCCTGCTGGTGGGGGCAGCACTTTGTATCCTTCTGGAAACATGGCATCCAGTTCCTCATCAGTCAATGGGCGGTTCCTCTCATCAATCTCTCGCTCCCAGCGCCAAGCCTGCAGCTGTTCTGGAGTCATGCTCATCAGGTGGCCTGCAAACATAGAGAAATTTACAGCATGTCCACAAATTGATGCAAAAAACATCATTAAATTCAACAACTATACAAATAAACAACAATATTGGTCCTGTACCTGGAGTGGGCGTGGCCATATTCATGGCAGGTGTACCCAGAGGTGTTTTTCCAGGGGTGAGCAGAGGAGTTGAAGAGCCCATCTGACTGGCTGGTGTTTCATCCCATCTTGACTTCCTCTTGCTTGCACCCGGGGTGGGCGTCTCACCCACTGACTCATCTCCTCTATCTGTACGTGGAGTCTCAGCCCAGCCACTGCCATGACCAGGTGTCTCTGAAACACAAAATAAAAACAACTTATAACCACTCTGCTTTAAGTACCTACTATTAGAAATTGTACAACAAAATGGACAGAAAATAAAAGACCTCTCTCTGTCTTTGGTGTCTCGTCCCAGCGGTTCTTGCGCACACTGGAAGAGGCCCCTCCATGTCCGGGAGTGGCATGTCCAGGGGTGTCTCGACCAGGTGTGGCAGCTCCAGCTGGGGTGTGACTCGGTGTGGGCTCCCACATACGGGTACTCGGAGTGGCTCCCGGGGTCTCGCTACCTTTGGGACGGCCTGGTGTCTCGTCCCAACGACTGTTGGAAGGTGTGTGTCCGGGTGTATGTCCGGGGGTCTGGGTAAAGTGAAGATCATGATTAGAAATATTCCTAGGTTAAGTGGCTTTGTGATAATGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58297 True 1082 lncRNA 0.49 3 1959260 1960717

Neighbor

gene id symbol gene type direction distance location
CI01000009_01897343_01919208 PIKFYVE coding upstream 39744 1897343 ~ 1919516 (+)
CI01000009_01892219_01893628 NA coding upstream 65506 1892219 ~ 1893754 (+)
CI01000009_01733394_01738937 ITGBL1 coding upstream 219792 1731294 ~ 1739468 (+)
CI01000009_01692563_01725364 ITGBL1 coding upstream 233896 1692563 ~ 1725364 (+)
CI01000009_01570544_01595199 NA coding upstream 363794 1570079 ~ 1595466 (+)
CI01000009_01966898_01976924 COQ10B coding downstream 6181 1966898 ~ 1977734 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding downstream 29983 1990700 ~ 1991387 (+)
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding downstream 32459 1993176 ~ 1999873 (+)
CI01000009_02028234_02100154 PLCL1 coding downstream 67517 2028234 ~ 2100154 (+)
CI01000009_02233367_02235148 RABL3 coding downstream 272650 2233367 ~ 2235793 (+)
G51216 NA non-coding upstream 5897 1953141 ~ 1953363 (+)
G51183 NA non-coding upstream 33541 1880934 ~ 1925719 (+)
G51198 NA non-coding upstream 78350 1880711 ~ 1880910 (+)
G51197 NA non-coding upstream 78903 1880111 ~ 1880357 (+)
G51196 NA non-coding upstream 80412 1878637 ~ 1878848 (+)
G51228 NA non-coding downstream 63392 2024109 ~ 2024459 (+)
G51185 NA non-coding downstream 77752 2038469 ~ 2045644 (+)
G51238 NA non-coding downstream 138561 2099278 ~ 2116721 (+)
G51261 NA non-coding downstream 191170 2151887 ~ 2152387 (+)
G51311 NA non-coding downstream 250366 2211083 ~ 2211312 (+)
G51122 NA other upstream 277294 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 520905 1429873 ~ 1435328 (+)
G50920 NA other upstream 1189027 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1863473 94371 ~ 97230 (+)
G51274 NA other downstream 294382 2255099 ~ 2350486 (+)
G51529 NA other downstream 1101316 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1242055 3202207 ~ 3208984 (+)
G53388 NA other downstream 3561525 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3899585 5931718 ~ 5943899 (+)

Expression


Co-expression Network