CI01000018_03923541_03939515


Basic Information

Item Value
gene id CI01000018_03923541_03939515
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3923541 ~ 3939670 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03923541_03939515.mRNA
GTCTGGAGGGAGACCCGGATCTGCAGTTTTTGCTGAAAGGTGGAGACCTACTAAAGGTGAAGTCCCACTCATGGAGGAAGACCCGCTACTTTCGGCTGAACGAAGATTGTAAGACTGTGTGGCAAGAGACCAGCAAGAAATTCAAGAGCGACACCAGCTTCAGCCTCGAGGACATTGAATATGTGCGGCATGGCCGTCAGACTGAAGCGCTGCAGAAGTACACTGACCCCTCAATTGAGGACCGCTGCTTCTCCATCATCTTCAAGGGTCGACGGAACAACCTGAACTTGATTGCCTCATCCAAAGAGGAGGCCAAGCGTTGGTCCTTACATCAGAAAAAAAGCTGGATCTATAACTGCATGCGCAAGGCAGACAAGAACGCAGACAACAAAATGTCCTTGAAGGAGTTGAAGCATTTCCTACGTCAGATCAATATTGAGGTGGATGACGGTTACGCTGAGACGCTCTTCAAGGAAATTGATGTAATCTATGGAAAGTACGCTCATACTGATGGACAGATGAGCTCCAGTGACCTGTTGAACTTCCTCCATAATGAGCAGAGGGAGCCAGTGTCTTTGGATTATGCATATAAGCTTATCGATAAATTTGAGGTGGATGAAATAGCCAAACTGAACAAGCACATGAGCAAAGATGGTTTCCTGATGTACCTGAACCATGAAGAAGGCTCCATCTTTAACCCCGCCCACAAAGCCGTGTACCAAGACATGCATCAACCACTCAATCATTACTTTATTTCCTCTTCCCATAACACCTATCTGATGGAGGACCAGCTGAAGGGGCCTAGCAGCACAGAAGCCTATATCAAAGCGCTGATAAAGGGATGCCGCTGTGTGGAGCTGGATTGCTGGGACGGTGAAAGCGGGGAGCCGGTCGTTTACCACGGTCACACGCTCACATCCAAAGTGCTCTTCAAAGACGTCATCAAGGCCATCAAAGAGTATGCTTTCAAAACCTCACAATACCCAGTGATCCTGTCTTTGGAGAACCATTGCACCACAGAGCAGCAGAAAATAATGGCCCATTACTTAACCTCCATCTTGGGCAGTGCTCTGCTCACTCAGCCACTGGGGCATAACATGCCCACCACTTTTCCAGGACCTGAGGAGCTGAAGGGACGTTTCCTGATCAAGGGAAAGCGTTTGAACAAACTGGATGCGGCATTCAACAACAACACCTCAGAGGATGTGGACAGCGTGTCGGAGGAAGACGAGGCTGCTGAACTGAAAGAGGCTGAACCGAAACCCAAAGACAAGACAAAAAAAAAGATCAAGCTGGCTAAGGAGCTGTCAGATTTGGTAATCTACTGCAAGAGTGTCCATTTCAGCAACTTTGAGCATTCAAGAGATAATCAGGCCTTCTATGAAATGGCCTCCTTCAAGGAGAGCAAAGCAATGAACCTGGCGGAAAACTCAGCTACGGCATTTATTCATCACAACATGGATAAGCTGAGCAGAATCTACCCAGCTGGCTCCAGAACCAATTCGTCCAACTACAATCCGGTGCCACTGTGGAACGCTGGCTGCCAAATAGTGGCTCTAAACTTCCAGACTCCCTGTAAAGAGATGGATCTGAACCAGGCCCGCTTTTTACCTAACGGCAAGTGTGGCTACATACTGAAGCCAGAGTTTCAGAGGGACCCGGGCTCCCAGTTTGACCCCATAAACCTCAGTGTAGGCCCCTGGCTGCAGAAGAAGTCCCTGCATATCATGATCATCTCAGCCCAGCAGCTGCCTAAGATCAATAAGGACAAACAGACCTCCATTGTGGACCCTCACGTCAGAGTGGAGATCTATGGTTTCAATCCAATGTGGAATACAAAATTCCAGTTCACTGTTCACGTGCCTGAACTAGCTTTGGTGCGGTTTGTGGTGGAGGACTATGATGTTGCTACCCAAAATGATTTGGTTGGCCTGTACACTGTGCCCTTCATCAGCATGCAGAATGGATACCGGCATGTGCCTCTGCTCACAAAGAGAGGAAGCCTCATTCCTTCAGCGGGACTGTTTGTGCACATCATGATTATTGATGCTTAATAGACTGCAACATTCCTCTCAGTCATCTCAATGTCAAAGTGTACAGATCACTGAACAGGACAATCAACTAAACTCTCCTATGCGAACACTTTCTAGGATAAGATTTGGACTTCCTTTTCCAATGTGCCTTGAGGTTTACAAATTAGCCCTCCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03923541_03939515.mRNA True 2209 mRNA 0.48 14 3923541 3939670

Neighbor

gene id symbol gene type direction distance location
CI01000018_03883336_03887135 ACAA1 coding upstream 36327 3882762 ~ 3887214 (+)
CI01000018_03865690_03869961 NA coding upstream 53478 3865311 ~ 3870063 (+)
CI01000018_03727066_03727226 NA coding upstream 196233 3727066 ~ 3727308 (+)
CI01000018_03714508_03725674 NA coding upstream 197611 3714508 ~ 3725930 (+)
CI01000018_03630815_03635622 NA coding upstream 287754 3630777 ~ 3635787 (+)
CI01000018_03964459_03964818 NA coding downstream 23765 3963435 ~ 3964881 (+)
CI01000018_04007742_04017494 GARS coding downstream 68072 4007742 ~ 4017781 (+)
CI01000018_04021370_04027014 HHATL, HHATLB coding downstream 80974 4020644 ~ 4027798 (+)
CI01000018_04029960_04035673 KLHL40B, KLHL40 coding downstream 90100 4029770 ~ 4035718 (+)
CI01000018_04084765_04090616 SEC22C coding downstream 144894 4084564 ~ 4091161 (+)
G104291 NA non-coding upstream 21393 3879048 ~ 3902148 (+)
G104340 NA non-coding upstream 91923 3830483 ~ 3831618 (+)
G104294 NA non-coding upstream 94405 3828397 ~ 3829136 (+)
G104290 NA non-coding upstream 95969 3827365 ~ 3827572 (+)
G104296 NA non-coding upstream 96329 3826788 ~ 3827212 (+)
G104381 NA non-coding downstream 19861 3959531 ~ 3959746 (+)
G104420 NA non-coding downstream 88217 4027887 ~ 4028235 (+)
G104452 NA non-coding downstream 170253 4109923 ~ 4110175 (+)
G104458 NA non-coding downstream 184273 4123943 ~ 4133035 (+)
G104519 NA non-coding downstream 353967 4293637 ~ 4293875 (+)
G104258 NA other upstream 232022 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1938230 1924489 ~ 1985311 (+)
G102895 NA other upstream 2337879 1582913 ~ 1585662 (+)
CI01000018_04368179_04375192 NA other downstream 430516 4368179 ~ 4375866 (+)
G104670 NA other downstream 816131 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1277010 5216452 ~ 5222616 (+)
G106429 NA other downstream 2941941 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022898 plcd1a coding NC_007135.7 CM002908.2 20372497 ~ 20419254 (+)