CI01000018_04029960_04035673 (KLHL40B, KLHL40)


Basic Information

Item Value
gene id CI01000018_04029960_04035673
gene name KLHL40B, KLHL40
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4029770 ~ 4035718 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04029960_04035673.mRNA
CTATAAATAGCCTCCAGTTGGAGTTTGGTTGAAGTATTGGAACAGCTGATGAAGACTGTATTCCTGACAGCAAAGCGGAACTGATTCAACCCTGCCTCTTCTTTCTCAACCACTAACAGAAGTGCGGAACAGAGAGCACTGGATTAGCCATTTACTTCATTGTGACCATCAGGGATAGTACGCAATCAATATGGCTCTACCCATAGATCCCATGGAGGAGCCGCGCATGTACCAGCAAACTTTGCTGCAAGATGGTCTATACGATCTTCTGGAGAGCGATATGATGGTTGACTGTGTGTTGAAGATAAAAGACAAAGAGTTTCCATGCCACCGGTTGGTCCTGGCTGCTTGCAGCTCGTACTTCAGAGCTTTTTTCAAGTCAGGTGTGGAGGAGAGTAAACAGAAGGAGATCGTACTGGAGGATGTGGAGCCTGGCGTCATGGGGATGATCTTGAAGTACCTCTACACCTCGAACATCAATGTGACGGAGCAAAACGTGCAGGACATCTTCGCTTTGGCCAACATGCTTCAGATTCCCTCGATTTTCACTGTATGTGTCTCGTTCCTGCAAAAGCGACTGAGTTTGAGCAACTGTTTGGCGATTTTTCGACTAGGACTGATGCTGGATTGTCCTCGTCTGGCCATATCTGCGAGGAACTTCGCTTGTGAACGCTTCAAGCTTATTGCTCGGGATGAAGAATTCCTGCAACTGATTCCGAGCGAATTGGCGGCCGTTATTGCATCTGACTCTTTGAACGTAGAAACGGAGCAAGAAGTTTTTGAGGCTTTGATCAAGTGGGTTGGACATGACCAAGAAAAGAGGCTGGAGGACCTACCGGGTCTGCTGGATTGCATCAGATTACGCCTGGTTCCTCAAGACTACTTCACCAAAAATGTGGAGAAACATGAATGGTTGAGCTCGAACCCTGAGATCACCAAGAAACTGCAACTAGTCAAAGACGCCCATGCTGGGAAGCTTCCAGAAGTCAAGAAGACCAAAACCAAAAAGAGTGCTGGCATCTTGAATGACAATCTGCGGTTCGGGATGTTCCTGAGAGACTTGATCTTCTTGATCAATGACACTGCATCGGTGGCTTATGACCCGACGGGAAACGATTGTTATGTGGCGGCACTCTCTACCCAAATCCCTAAAAACCACTGCAGTCTGGTCACAAAGGAAAACCAGATATTTGTGGCAGGTGGACTCTTTTTTGATGAGCAAAACAAAGACGAACAGATCTATTTATACTTCTTGCAGTTTGACCCTGCGACCTCAGACTGGATGGGCATGCCTCCCATACCCTCCCCTCGCTTCCTGTTCGGGATGGGTGAGGCTGAAAACTTCATCTTTGTGATTGGAGGGAGAGAAATGAAGGAAGGAGAACCCATTCTGGAAACTGTCATGGTTTATGACAGACAGTGTCTTAAATGGGCCGAGTCAGATCCTCTTCCCTACCCAGTATATGGCCATGGAGTAGTGTCTCATAATGAAATGATCTATGTAATTGGAGGAAAGGGGGAGAACAAACAGTGTTTGAATAGAGTGTGTGCCTATGACACTACAAAACATCAGTGGACAGATCTGGCTCCATTAAATACTGCACGTTCACTTTTTGGGGTCACCATCCACAAAAATAAGATCTACGTGGCAGCTGGTGTCACTGACACTGGCCTCACAGGCAGCGCTGAGGTCTATGACATCAAAACCAACAAGTGGTCAGAGTTTGTGGAGTTTCCCCAGGACCGTAGTTCCCTTAGCTTGGTCACTGTGGGTGGTGTCCTCTATGCTGTGGGTGGTTTTGCCATGTTCCCCAAAGAGGACAGCGATGATCTCATGCCGCAGGAGATGAATGACATCTGGAGGTATGATGAGGGCGAGAGGAAATGGAACGGCATACTGAGGGAGATTCAATATGCATCTGGTGCAACAGTTCTGGGAGTTCGTCTCAACACTCTTCGACTCACAAAAATGTGAGACTACGCCAGTGCTGTCTAATGATTCAGTGTAAAGGAAAGAAGA

Function

symbol description
klhl40b Acts upstream of or within skeletal muscle fiber development and swimming. Predicted to be located in cytoplasm. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in eye; fin; skeletal muscle; and somite. Human ortholog(s) of this gene implicated in nemaline myopathy 8. Orthologous to human KLHL40 (kelch like family member 40).
klhl40 Predicted to be involved in myotube differentiation and regulation of cellular protein metabolic process. Predicted to be located in cytoplasm. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in A band and I band. Implicated in nemaline myopathy 8.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04029960_04035673.mRNA True 2020 mRNA 0.47 7 4029770 4035718

Neighbor

gene id symbol gene type direction distance location
CI01000018_04021370_04027014 HHATL, HHATLB coding upstream 1972 4020644 ~ 4027798 (+)
CI01000018_04007742_04017494 GARS coding upstream 11989 4007742 ~ 4017781 (+)
CI01000018_03964459_03964818 NA coding upstream 64889 3963435 ~ 3964881 (+)
CI01000018_03923541_03939515 NA coding upstream 90100 3923541 ~ 3939670 (+)
CI01000018_03883336_03887135 ACAA1 coding upstream 142556 3882762 ~ 3887214 (+)
CI01000018_04084765_04090616 SEC22C coding downstream 48846 4084564 ~ 4091161 (+)
CI01000018_04234688_04235225 CST14A.1, CST14A.2 coding downstream 198970 4234688 ~ 4236015 (+)
CI01000018_04237268_04237554 NA coding downstream 201372 4237090 ~ 4237554 (+)
CI01000018_04243337_04245807 NA coding downstream 207306 4243024 ~ 4245990 (+)
CI01000018_04259548_04261044 NA coding downstream 223830 4259548 ~ 4261570 (+)
G104420 NA non-coding upstream 1535 4027887 ~ 4028235 (+)
G104381 NA non-coding upstream 70024 3959531 ~ 3959746 (+)
G104291 NA non-coding upstream 127622 3879048 ~ 3902148 (+)
G104340 NA non-coding upstream 198152 3830483 ~ 3831618 (+)
G104294 NA non-coding upstream 200634 3828397 ~ 3829136 (+)
G104452 NA non-coding downstream 74205 4109923 ~ 4110175 (+)
G104458 NA non-coding downstream 88225 4123943 ~ 4133035 (+)
G104519 NA non-coding downstream 257919 4293637 ~ 4293875 (+)
G104521 NA non-coding downstream 266481 4302199 ~ 4302434 (+)
G104522 NA non-coding downstream 267043 4302761 ~ 4302962 (+)
G104258 NA other upstream 338251 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2044459 1924489 ~ 1985311 (+)
G102895 NA other upstream 2444108 1582913 ~ 1585662 (+)
CI01000018_04368179_04375192 NA other downstream 334468 4368179 ~ 4375866 (+)
G104670 NA other downstream 720083 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1180962 5216452 ~ 5222616 (+)
G106429 NA other downstream 2845893 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022901 klhl40b coding NC_007135.7 CM002908.2 20575259 ~ 20581672 (+)