CI01000018_03883336_03887135 (ACAA1)


Basic Information

Item Value
gene id CI01000018_03883336_03887135
gene name ACAA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3882762 ~ 3887214 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03883336_03887135.mRNA
CTATAAAAATAGGGAGACAGGTCTGAAACTACTAAAAAATAAAAAAAAATTTAACAAATGGACAGTAAAAGTAGGTGGGTGTAGATAATATCAATCAGGAGGTCAAACTAAATTATTACAGCAGATTTATTTTATAGCACTACTGTCATTTATATGATGTTTCCAATATTATCCAATATGATTAATTTTATATGAGGTTAGAAAATACGTCAAACATCTGTGGCATGTCGAAACAGTTTAAAACCCTGATTTATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTGAAGTTTGAGAAACTCCACATTTGTACTTCATTCCCCATAATTCCACACGATGACGTCAGAACGCACTAGCCAATGATAACCAGTGTGACCAGAGAAGCAAAGTTCACCAGGAAACTTCATGAGAAATGTAGAGCGTAGTTCATACATCAGTGACTGTTAACCATCTGTGTTTGTCTCAATAAACGGTTATTCTTTTATTTTTTTTTCGTGTCCACATTTACGTCATTAAATATGCACAGAGTGCAGGTTTTGTCGGGACATTTGTCGTCAAATAAACGTGTGGGAATGAGGCAGTGCAGCGCATCAGTTGCTGATCCAAATGATATCGTTGTGGTTCATGGGCTACGAACAGCCATCGGCCGAGCAAAGAGAGGATCTTTTAAGGACACTACCCCAGATGAGCTGCTCAGTGCTGTGATGAGTGCAGTTGTTAAGGATGTGGGACTGCAACCCTCTTTACTAGGGGATGTTTGTGTTGGTAATGTGCTACAACCTGGTGCAGGTGCACTTATGGCTCGAATCGCACATTTTCTTAGCGGCTTTCCTGAGTCTGTACCTGTCTACACTGTAAACAGGCAGTGCTCTTCTGGACTACAAGCACTTTTTAATGTTGCAGGTGGAATCAGAGGAGGTTCGTATGACCTGGGACTTGCCTGTGGTGTGGAGAGCATGTCTCTTCGTTCGCCGGGGAACCCAGGAGACATCAGCCCCCGACTGATGGACAATGAAAAAGCCAAAGACTGCATCATTCCCATGGGAATAACCTCAGAGAATGTTGCTGAGAGATATGGCATCACTAGGGAAAAGCAGGACAGCTTTGCTCTCGGTTCCCAACAAAAGGCAGCCATGGCGCAGAAAAAGGGCTTATTTGATCAAGAGATCACACCAGTCACTACTAAATTTGTGGAGGAAAATGGCACCGAGCGCACCATTACTGTCACAAAGGATGATGGGATCCGGCCTGGGACTACCTTAGAAGGCCTTGCCAAACTGCGACCAGCATTCAAGGAAACCGGCAGCACCACAGCTGGAAATGCCAGTCAGGTGAGTGATGGCGCTGCGGCAGTGCTCATTGGGCGGAGATCTACGGTGGAGAAAATGGGACTTCCTGTTTTTGGGGTGCTGAGGGCGAGCGCTGTGGTGGGTGTTCCACCGGACGTAATGGGCATTGGCCCAGCTTATGCTATACCAGAAGCCCTCAACCAGGCTGGGCTAACTGTGGATGATATTGATGTGTTTGAGATCAATGAAGCATTTGCCAGTCAGGCTGTGTATTGTGTGGAAAAGCTGGGCATTCCTTTAGAGAAAGTGAATCCTAATGGAGGGGCCATTGCTCTGGGTCATCCACTGGGCTGCACTGGTGCTCGACAGGTCGTGACTTTGCTCAATGAGCTCAAACGTAGGCGCAAGAGAGGGTATGGTGTGGTGTCCATGTGCATTGGGACTGGAATGGGAGCAGCTGCAGTTTTCGAGTACCCTGGACCGTGATGCAAGCTCTAGTGCAAAATCCCAAGATGCAAATCTCCTGATAATGTGCAGAGAAACTAACAGTCACAAATTATTTTTA

Function

symbol description
acaa1 Predicted to enable acetyl-CoA C-acyltransferase activity. Predicted to be involved in fatty acid beta-oxidation and phenylacetate catabolic process. Predicted to be active in peroxisome. Is expressed in gut and liver. Orthologous to human ACAA1 (acetyl-CoA acyltransferase 1).

GO:

id name namespace
GO:0003988 acetyl-CoA C-acyltransferase activity molecular_function

KEGG:

id description
K07513 ACAA1; acetyl-CoA acyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03883336_03887135.mRNA True 1856 mRNA 0.45 12 3882762 3887214

Neighbor

gene id symbol gene type direction distance location
CI01000018_03865690_03869961 NA coding upstream 12699 3865311 ~ 3870063 (+)
CI01000018_03727066_03727226 NA coding upstream 155454 3727066 ~ 3727308 (+)
CI01000018_03714508_03725674 NA coding upstream 156832 3714508 ~ 3725930 (+)
CI01000018_03630815_03635622 NA coding upstream 246975 3630777 ~ 3635787 (+)
CI01000018_03513125_03558562 SLCO5A1 coding upstream 324042 3511362 ~ 3558720 (+)
CI01000018_03923541_03939515 NA coding downstream 36327 3923541 ~ 3939670 (+)
CI01000018_03964459_03964818 NA coding downstream 76221 3963435 ~ 3964881 (+)
CI01000018_04007742_04017494 GARS coding downstream 120528 4007742 ~ 4017781 (+)
CI01000018_04021370_04027014 HHATL, HHATLB coding downstream 133430 4020644 ~ 4027798 (+)
CI01000018_04029960_04035673 KLHL40B, KLHL40 coding downstream 142556 4029770 ~ 4035718 (+)
G104340 NA non-coding upstream 51144 3830483 ~ 3831618 (+)
G104294 NA non-coding upstream 53626 3828397 ~ 3829136 (+)
G104290 NA non-coding upstream 55190 3827365 ~ 3827572 (+)
G104296 NA non-coding upstream 55550 3826788 ~ 3827212 (+)
G104339 NA non-coding upstream 61303 3821071 ~ 3821459 (+)
G104381 NA non-coding downstream 72317 3959531 ~ 3959746 (+)
G104420 NA non-coding downstream 140673 4027887 ~ 4028235 (+)
G104452 NA non-coding downstream 222709 4109923 ~ 4110175 (+)
G104458 NA non-coding downstream 236729 4123943 ~ 4133035 (+)
G104519 NA non-coding downstream 406423 4293637 ~ 4293875 (+)
G104258 NA other upstream 191243 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1897451 1924489 ~ 1985311 (+)
G102895 NA other upstream 2297100 1582913 ~ 1585662 (+)
CI01000018_04368179_04375192 NA other downstream 482972 4368179 ~ 4375866 (+)
G104670 NA other downstream 868587 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1329466 5216452 ~ 5222616 (+)
G106429 NA other downstream 2994397 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022897 acaa1 coding NC_007135.7 CM002908.2 20325312 ~ 20332460 (+)