CI01000018_04021370_04027014 (HHATL, HHATLB)


Basic Information

Item Value
gene id CI01000018_04021370_04027014
gene name HHATL, HHATLB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4020644 ~ 4027798 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04021370_04027014.mRNA
ATATAAAAGTGATGCTTCAGTCAATACAATGAGAGCAGAAAATAGTCCAGCTAAAAATAGCAAGAGCTCACATAGTGTAGATGCTTCCTGCTCACACAATTCAAATTATTGGAAACTTCTGCCCTGCCCAGAAAGATCAAATTGTTTTTGGTTTTATTTATTTTTGCAAGAAAGTGTTCAGAGATTAATATATAATTCGGTAACACTAGTCCAGTTAGGACATTGTACTAACTATAGGTAACTTTGCAACTACATGTCAACTACCAGTCATTATAACTTTTCAAGAACATGTTAACTTATTTTACTAACCCTAACCCCAACCTAACAGCCTACTAGTACTCTAATGAGAGTTAGTTGACATGTACAGTAGTTGCAAAATTACTTATAGTTAGTAGAATGTCGTAAGTGGACTATCAAAATAAAGTATAGCCTATAATTCTTATTGCAATGACTGATGTAGTTTAAACATTCACAGCATACTTTTAGCAATTCATGAAGTGAACCTATGACCTTGCCATTGCTAACGCCATGTTCTACAAGTTGAGCTACAGTAACACTGCAATATTGCTTTCATCCCATAGTAGATTACCAATTACCAAGTTATATTTTTAGTAGGATCTTAAGCGCTCATTGGCTGTCCTGATTGGGAAATATTTTAATGACACCAGATTTGTTTTCTCATTCTAACTGCACCTTTCCAAACTCTCTTAGGTTGTCCTGTGCACAATGGGGGTCAAAGCAGCTCTTCCGAGGTACGAGCTCTACTTGTATAATGTAGTGCTGTGTATGGCAATGCTCTGGGCTGCCAGATGGATATTTGACGTGTCTAGCTCAAATTCCAATAGAAAAACCTTCAAAACCAGTGTTCAGCCAGGATGGTACTACTCTGGCAGAAAAATGGATACAGCTGACGTCGAGTGGATGATGTGGTTTTCCACGTTCCGAGAGCATATCATCTTTGCGCTCTCAGGTCACGTGATCTTTGCCAAGATCTGCTCGTTGCTGGCTCCACAGTACAGATCTCTGGTGTACATGGTGTACGGTATGCTGGCGGTTTTCAGCAGTATGGGCTGGGCTTACGTCATGCTCATCCTCTCTCACTGCGTGCTGCTCTATAGCATCTCTCTGGTCAAGCTCAGGTGGCTCTGCTTCGTTGCTGGACTCACTACACTGGCCACTTTCAAAATGGAGCCCTTCATTTCCTGGCAGGCAGGGTTTGCGACTGGCAATTTTGAGCTCCGTCCTCTTCTGTTCTACGGTGGCTGTGGTTTCACCATCATGCGCTGTATGAGTTTTGCTCTTGAGAACTGTGAGAGAAAAGATGGAAACTACAGCATCCTGGAGCTTCTCAAGTACAACTTTTACCTCCCCTTCTTTTACTTCGGACCCATCATGACATTCGACAAGTTCTACATTCAGGCCAATAACCCTAACCTGACGAGGAAGGACGGGGAGATGTGGAACATTTCCATTCAGGCCCTGCTAAACCTGGTGGTTATTATGATAGTGGCAGTCCTCTTTCACTTCATGTACATTCTGACCATTCCTACTGACATGAAGCTCCTTAAACACATCTCTGACTGGGCCCTCGTTGGATTGGCCTACTTAAATCTGGTGTATGATTGGGTGAAAGCGGCAGTGATGTTTGGAGTGATAAACACAGTATCAAGACTGGATCATCTGGACCCTCCCAAACCACCGAAATGCATTACAATGCTCTATGTTTTCTCTGAGGCGTATGTTTATAACTATCTCGGCGGGAAACATGAGAACGTTTTGGATGAGCTGATAGCCTCTCTGTGCACGTATGGCATCATGTCCCTCTGGCTGGGACCAAGCTGGGTGGTTTTCATCTGGGCTTTCTTAAACTGCTTTGGCCTTAATTTTGAACTGTGGGCCGCAAAATTATTCTCCATGGAACCTTTTATTTCTATTGAGATGGCGATATCAGATTCTATGTCACGCAGGATCAGGGCTGTGTTCAATACTTTCAACTTCTGGACAATTGTCCTTTACAATATCCTGGTCCTGAACAGTCTTGAATTTGCCAAACTGGTTGCAAAGAGATTGTTACTTAAAGGTTTCCCCTTCACGACCATCACTGTGATGTTCGTCACCTACTGCTTGATTCAGCTGATTAAGGAAAAGGAAAGAAGACAGGCTTTGATTGACGACCCAGACCCAATCCCCCCTCCAGCCCCTGTTCCTGCACCCACAGCTGCACCCACTACCACAGATCCCAGCACCACCCAGATGGACGCTGCTGCCGCCCAGCCTGTCGACCCAAACAAGCAAAAGGCAGAGTAGAGATTACACATGATGGTTACATTTTTATAAAACCTGAATGGTTTACTTAGACATTTTGTGTCAATCATAGTCAAGAAATAATGTTTTAATAATGGTACTGTATCGAAACAACTATTTAAGTTTTTACAGATTTTCTCAACATTACAGACTCTACTCTCATTGGCTACTTTTTAAATTAGTGACAGTTTTACATATGTAATAGGAGTTTCAAATATGTTCTTTGTAGTTAAAAACATAGAGGATGAATTTTATTATTACAAATTTTATAACTAAGTTTTAATTCAAATGAAATACAAATACTCAGTGTTCATACCAGAAGTAATTACTGCCTGAGGTTGAAAATATGTGCTTAAATGAAAGTAATGGAGTGAAGATCACAAAGATTATTTTATGAATTTGTGATATGCATTAAAATAAGCTTCATTGACTATGTGTATGTCTCTTTGTCAACTTGCTAATTTTTCCTAAGTTCTTTTCTAAACCTTTTTTTTTTTTTGGAACTTCCATTCATTTTTCAAATGACTGTAAATACAGAAATGGTAGAGTTCTTATTGACAGAGATTGATCACAGAGTCTCTGGGACGTGGTCGCTTAAATTAAACCGTGACTGTTAACAAAAGCATGAATGCCATTGAGAACATTCAAGATCTTTGATGTCATGAAACCCTTTTCACTCTAGGATATTTATATGAACTGGCCTAAGCTCTGTTCTATTTGTTCAACTGTTAAAGTAACCAATGATCATGTGTGAACTATTGATATTCTCATCAGTGACTCCTTAGAA

Function

symbol description
hhatlb Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in muscle pioneer; myoseptum; and myotome. Orthologous to human HHATL (hedgehog acyltransferase like).
hhatl Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Located in perinuclear region of cytoplasm.

NR:

description
Zgc:154131

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04021370_04027014.mRNA True 3091 mRNA 0.40 10 4020644 4027798

Neighbor

gene id symbol gene type direction distance location
CI01000018_04007742_04017494 GARS coding upstream 2863 4007742 ~ 4017781 (+)
CI01000018_03964459_03964818 NA coding upstream 55763 3963435 ~ 3964881 (+)
CI01000018_03923541_03939515 NA coding upstream 80974 3923541 ~ 3939670 (+)
CI01000018_03883336_03887135 ACAA1 coding upstream 133430 3882762 ~ 3887214 (+)
CI01000018_03865690_03869961 NA coding upstream 150581 3865311 ~ 3870063 (+)
CI01000018_04029960_04035673 KLHL40B, KLHL40 coding downstream 1972 4029770 ~ 4035718 (+)
CI01000018_04084765_04090616 SEC22C coding downstream 56766 4084564 ~ 4091161 (+)
CI01000018_04234688_04235225 CST14A.1, CST14A.2 coding downstream 206890 4234688 ~ 4236015 (+)
CI01000018_04237268_04237554 NA coding downstream 209292 4237090 ~ 4237554 (+)
CI01000018_04243337_04245807 NA coding downstream 215226 4243024 ~ 4245990 (+)
G104381 NA non-coding upstream 60898 3959531 ~ 3959746 (+)
G104291 NA non-coding upstream 118496 3879048 ~ 3902148 (+)
G104340 NA non-coding upstream 189026 3830483 ~ 3831618 (+)
G104294 NA non-coding upstream 191508 3828397 ~ 3829136 (+)
G104290 NA non-coding upstream 193072 3827365 ~ 3827572 (+)
G104420 NA non-coding downstream 89 4027887 ~ 4028235 (+)
G104452 NA non-coding downstream 82125 4109923 ~ 4110175 (+)
G104458 NA non-coding downstream 96145 4123943 ~ 4133035 (+)
G104519 NA non-coding downstream 265839 4293637 ~ 4293875 (+)
G104521 NA non-coding downstream 274401 4302199 ~ 4302434 (+)
G104258 NA other upstream 329125 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2035333 1924489 ~ 1985311 (+)
G102895 NA other upstream 2434982 1582913 ~ 1585662 (+)
CI01000018_04368179_04375192 NA other downstream 342388 4368179 ~ 4375866 (+)
G104670 NA other downstream 728003 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1188882 5216452 ~ 5222616 (+)
G106429 NA other downstream 2853813 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022900 hhatlb coding NC_007135.7 CM002908.2 20559009 ~ 20572170 (+)