CI01000018_03513125_03558562 (SLCO5A1)


Basic Information

Item Value
gene id CI01000018_03513125_03558562
gene name SLCO5A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3511362 ~ 3558720 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03513125_03558562.mRNA
GTATAAAATTACCGTTATTGTAATGTTGCGGTAAGGACATTTTGTAAGAAGAGATGAAAACCATAAAAAATAAACATTTATATGTATTACAGACTGTGATGGTTAAAATTAAAATTCATAGAGGTTGATTTTTTTTTTTTTTTTTTTTTTTTATAAATTGGGAGTGTCAAAAGTGCCCGTAGTTGCAGAATCACCCATTTACAGCGATCAGCGAAATGTGGATGTAGTAGACGAATCTGACCACCAGGGGGTGCCACTGGAATTATTTCACCAACGAACATTTGAGTACAAATTAACAGGCATGTGGGAAAGTTATAAGGGCTGGTTTGGTTTGCTGTCTTCATCGGAGCGTAGGAGACAAGACCGAGACATGACTCAGGGAAAAAACATTCCTGGAACAACTATGAAACAGTGAATCAAGAGTTATGTATCTGAAGCTACAATACATTTTATATACATTCTATATTTATGATAATCAACATGCTTCTCGCAGACTTTTATTGGAAACTCCTTAAACTGCACAAACACTGCCACATGCACATTCTAAGACTTTTTTGGGGAGCAGAGTGGTGATAAACACTAAAAAAGAGCGACATTGTCCAAAGACATGGGTCAAAGGTCAGCTTGACACCTGGGTGAGAGAGAGATCCCTGAAGAAGACCATAAAGTTTGGGTTGCATGCGTTTATTATTACTTAAAGAATCTTTTTATGTGATAGTTGTCATCATGAAGAAGCTTCTTTTGTTATTGTTTTTCTGTAGGCTAGTCATCAGCAGCATAATATATCTCCATGTGAGGTCGTGAAAAATAGGGATTTTAGAAACAATGGTATATGGGGACTACATTTCCCAGAATGCACTCGGAGGGCTCCGTCACCCCCTTCATCAAATCCGCAATCTCATTGACTCACTGTCCGTGTCGAGGACAACAACTCACTACCTCTGTCTCTATCGCCCGTGTAAGTACACTACTCTTCATTCAGTTCACTCTTCATGCAGTTCATTATTGTTTTTCTCGATGTCTTATTTAGAGCTTAGAGTCGAACTGAAAGGAATGTGCTGTGAATTAATTCACTGAAAGGATAAGTGTTTGGACTGACAGTATAGTACTATATTTCTCTAAATTACATTCATGTATAAAGTCGTGACTTCTTAAACGTTAGGCCGGTAATTAGTTATATTAGATAAACAAACAATTCTGGCAGGTTGACACGGTTTTAAATTTTTCTGATAGTGTTTTATCAGTGGTCCGTCGCACGTTTACTGTTATTCTTTGTCTTGCTCGACCACTAATCTACCAGACAGCAGCTCGACTTCACAAAACAAATTACAGGATCTGTAACGCTGTTTGTGTTGCTTCTTGAACCGTTAGTAAGCAAATACTAATACTAGTTTGTTTTTATTTCCATTGTTTTCAGGATTCTGCACAGCTGAATCTCTTCTGAATCATTCAACTACAAAGAATAATTTCAGCACCATGACCAGAGATCAATTCCTCCTGTTTATAATGAAATGAATTGAACTTTTTGCTGCTACACTTCTAGATGAGGCAGCACATGATGCTTGCATATGATATGATCACTTTCCAATCTATTATGATGAGGAATATGTAGAAAAATAGCAGTTGGACAGGTATACAGAGGAACCATGCTTGGAAGTGTAGTCAGTGTACCTCTTTATTGTGTGTCTGTGTAGTCTAACTGCTGTAAACTTTAATTTATAATTAAATTATAGTTCTATTTGCATTGACTCCAAGCAGCCAAAATGACTTCACCTTATAACGATGAGACCAGAAGTGATATATCAGAGTCTCTGGAAGTCTGTGAATTCGAGGGACAGTACGGAGATCCGGGTGGCTACTACAAATCCAAAAGCTTGCCTGTTCTTAATGGCAGCTGTCCGAATGTTAATGAGACGTTTGAACCGAGGCTGGTCAGCACGACGCAGACTTTAGTAAATACTGACCAGTGCTTGGTGTTCAATGAGCTGCGGCAGAAAGGAGACTCAAGCGAACTGGATTCACCCACCAGGACTGATTTCTCCCCTTCGATGTCCAGTATGGTGGGTCTTAGTAGCTCAATGAAAACTGAGCCCAACCGAGCCGGTGGCAAAAAAATAGGCTTTTCATTGGCAAGATTCATCCGCTTTCCTGTGAGGAAGTACATGAGGGTGATTCTGTCAGACTCTAGGTGTTTTCTGTTCTGTATGTGTTACCTGACGTTCATCCAGTCGTTGATGGTCTCGGGCTACCTTAGTAGTGTCATCACCACTATAGAAAAGAGATACAGCCTTAGAAGCTCTGAATCAGGACTGCTGGTTAGCTGCTTTGACATTGGAAGTCTGTTGGTGGTGGTCTTCATCAGTTATTTCGGGGGTCGAGGCCAGAGGCCACGCTGGTTGGCGGTAGGTGGGGTGTTTATCGCTGTGGGAGCAGCTCTCTTCTCCCTTCCACATTTTATCTCTCCACCCTATCAAATCCAAGAGGTCAACTCCTCCACGGGGAACAAGGGCCTGTGCTTGAATGGGAACGGGAGCAGAAGGGACGCTCTGGACGTGTCGTCCTGTGCACGAGACCAAGAGGGCAACGATCACTCCATATATGTTGCCCTATTCATCTGCGCCCAGGTCCTGGTGGGCATGGGATCCACTCCCATCTACACGCTGGGACCAACGTACCTGGATGATAACGTGAAAAAGGAGAACGCATCCCTCTACCTTGATAAATACAGTGTGCAAAAGCCAGTCGGTCCAGATGGCTCTTTTAGAAAGAATGTGCCGAGGGATCATCTTACCACATGTCTTCTTTTATTTCATGGTCAGGTGACAGAGAAGGAGCGAGTGAAATTTAGGGTAGAACTTGGAACATCAGCAGTAGTGTTTCAGATTTGTAGTGAATGTTGCTGTCAGCGTCGGTCGGAGTTCCACGCGTTTGCATCAGAATCAGCAGAAACCGTGAAGGGAGTCAGCAATGTGCAGCAGAACCCCTGCCACATCCAGCACTCTGACTGGATTGAGCTGGCAGCACAGGCCGAGATAACAAATCCTCAAGGAGTCAGTCAGGGTCGAGAGCGTTTCAGTCAACCTCTGAGCGGTACCGTGTCTGATGCCGAGAGCAAAGAGAAAAAAACAGCAGTTCCTTGCACCATAAAACAAGCCATATCTACATCCATCAAACACGGGAAAAGAGAACACACACAGCTGCACTTCTCTAAAGCGATCAGTGCAAGCACCTCCTCTGTCCTTCCCAGGAAGAAGGAGAGAAAAAACAGATTGGGTAAAATCTATGCTGGTATTCTGCCAGAACCAGCTTGGCAGCCGCGCGGGCCATGTGGAAGTGGAGAGAGTCCACTGCTGCTTTCTCTGAACAGGCGCAAACAGATGACTGTAGGGATAATGCTCTCCCCACAGTACACACATGGGGATCCAGCCTCGAAAGCAAAAACGCATACTATTATGTATGTGATGGGTGCTCTGGGGCCAGCTGCGGGTTACCTCCTGGGAGGCGTTCTGATTGGTTTCTACGTGGATCCCAAAACAATTGCCAACATTGAGCAAAGTGATCCACGCTTTGTTGGCAACTGGTGGAGTGGTTTCCTGCTCTGTGCTTTCGCCATGCTGTTGGTCATCTTCCCCATGTTCGCTTTTCCCAAAAAACTGCCCCCTCGTCACAAGAAGAAGAAGAAAAAGAACGGGACGGACAGCACTTCTAATGACGACGATGTCCTGAAAGAGAAATCCAACAGCAAAGGCCAGACCGTGGCGTCCTCCATGGGCTTTGGGAAGGACATCAAAGACCTCCCCAAGGCTGCCATAAGGATCCTCAGCAACATGACGTTTCTGTTTGTGAGTCTGTCCTACACGGCCGAGAGTGCCATTGTCACTGCCTTCATCACCTTCATCCCTAAGTTCATCGAGTCGCAGTTTGGAATCCCTGCCTCCAACGCCAGCATATACACAGCCCTCAAAAACCTTCATCTCAGACTCAAGATCATTATTAAGCCATGCATATGTCCAAATATCTCAGCACAGATGCTCTCTCATAAGGGAGGTGTTCCTGACGCACTACTGGCTAAATATAGCCCAAAGGGACACTGTATTGGCTTCACACAGCCGTGGTTGTCTCATGAATGGGCGTTCTTACCACCTTGTCAGGTTGGAAGGTCTTTAGAGTTTAAAATGCCACATGGGGTCATTATCGTGCCCAGTGCAGGCGTGGGCATTGTACTGGGTGGCTACATCATAAAGAAACTTAAGCTTGGAGCTCGTGAGTCTGCCAAGCTGGCCATGATCTGCAGTGGGGTGTCTCTTCTGTGCTTCTCCACCCTCTTCATTGTGGGCTGTGAGAGCATAAACCTGGGCGGCATCAATATCCCTTATACCACAGGGCCGACCCTCACTCTGACCCACAGAAACCTGACTGGAGGCTGTAATGTGAATTGTGGCTGTCGGATCAACGAGTATGCTCCTGTGTGTGGCTCAGATGGCATCACATATTTCAACCCCTGCCTGGCGGGATGCAGTATGGTTGGCAATGACAGCACTGGGATCAGAAACTACACAGACTGTGCATGCGTGCAGAGCAGACAGGTCATCACCCCACCCACCAGCGGCCAAGGCAACCAGCTGCAGCTGGTCATAGTGAAGACCTACCTGAACGAGAACGGATTCGCTGTGTCAGGGAAGTGTGATCGCACCTGCAACACGCTCATCCCCTTCCTCATCTTCCTCTTCATTGTTACGCTCATCACAGCTTGTGCACAACCCTCCGCCATTATCGTCACTCTCAGGTCAGTAGAAGAGCAAGAAAGACCATTTGCTTTAGGAATGCAGTTTGTGCTGCTAAGAACTCTGGCCTACATTCCCACACCCATCTACTTTGGGGCGGTGATTGACACCACCTGTATGCTGTGGCAGCAGGACTGTGGCGTTCACGGCTCTTGCTGGGAGTACGACGTCACTTCTTTCCGCTTCGTTTACTTCGGCCTGGCTGCCAGCCTCAAATTTGTGGGCTTCGTGTTCATCTTCCTCACCTGGTACTCAATTAAATACAAAGAGGATCGGCTGAAGCGCTGGCAGCAGCATCTGCCACCTCTGGGCACCGTCAGCGAGCTCATCTGTCATGCAGGAGGCCACAAGAGCCACGCTCGCACCCGCTCCTGCCCTGTTTTCACACCCCGCCCCGAGCCCCCTGAGCAGCCCGCTCTTAATCGCGGACACTGCAGCCAGAGCTGCCCTGGAAACACCCTCAAAGCAATAACCCCACCTGCCCGCTCAATGCAGGAAATGAATCGCATCTGAAGACGCGTCCCCCGACATCTGCCTCCATGTGCCTTCCTGTCAGGTGTCCTTCTCCACGACAAGACAGGGCCAACGTACGCCTGTTTTTCCTCCCGCGCGACTTTCAGGGGCTTGCTGCGCTCGCCGATCTCAATGTCACCAGTACAATCTCACAGCAA

Function

symbol description
slco5a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Located in intracellular membrane-bounded organelle and plasma membrane.

GO:

id name namespace
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG:

id description
K14356 SLCO5A; solute carrier organic anion transporter family, member 5A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03513125_03558562.mRNA True 5455 mRNA 0.47 19 3511362 3558720

Neighbor

gene id symbol gene type direction distance location
CI01000018_03482157_03507502 SULF1 coding upstream 2896 3481433 ~ 3508466 (+)
CI01000018_03468481_03471726 NA coding upstream 39482 3468273 ~ 3471880 (+)
CI01000018_03315696_03388918 NA coding upstream 122444 3315696 ~ 3388918 (+)
CI01000018_03168822_03281088 PREX2 coding upstream 230274 3168822 ~ 3281088 (+)
CI01000018_03144746_03157987 NA coding upstream 353119 3144654 ~ 3158243 (+)
CI01000018_03630815_03635622 NA coding downstream 72057 3630777 ~ 3635787 (+)
CI01000018_03714508_03725674 NA coding downstream 155788 3714508 ~ 3725930 (+)
CI01000018_03727066_03727226 NA coding downstream 168346 3727066 ~ 3727308 (+)
CI01000018_03865690_03869961 NA coding downstream 306591 3865311 ~ 3870063 (+)
CI01000018_03883336_03887135 ACAA1 coding downstream 324042 3882762 ~ 3887214 (+)
G104206 NA non-coding upstream 64290 3446845 ~ 3447072 (+)
G104199 NA non-coding upstream 73727 3437399 ~ 3437635 (+)
G104191 NA non-coding upstream 86674 3424281 ~ 3424688 (+)
G103688 NA non-coding upstream 377367 3114952 ~ 3133995 (+)
G103645 NA non-coding upstream 452843 3055389 ~ 3058519 (+)
G104219 NA non-coding downstream 8890 3567610 ~ 3567882 (+)
G104221 NA non-coding downstream 25624 3584344 ~ 3584573 (+)
G104229 NA non-coding downstream 56584 3615304 ~ 3615594 (+)
G104249 NA non-coding downstream 114141 3672861 ~ 3673062 (+)
G104255 NA non-coding downstream 129280 3688000 ~ 3688300 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1526051 1924489 ~ 1985311 (+)
G102895 NA other upstream 1925700 1582913 ~ 1585662 (+)
G104258 NA other downstream 132369 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 811466 4368179 ~ 4375866 (+)
G104670 NA other downstream 1197081 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1657960 5216452 ~ 5222616 (+)
G106429 NA other downstream 3322891 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019430 slco5a1,LOC107695420,LOC107758302,LOC107741005 coding CM030124.1 CM030124.1 19914019 ~ 19918646 (-)