CI01000018_03315696_03388918


Basic Information

Item Value
gene id CI01000018_03315696_03388918
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3315696 ~ 3388918 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03315696_03388918.mRNA
GAGATGATGACCAAGCTGATAACTGAGACACCAGACCACCCCATTCCTTTCCTCATTGGCCATCTGCAAACCAAGCAGGAGAGCCCCGGCAGGATTCAGAGGACCCTGTCGGGATCTGCTGCATTGTGGGCTGAGAGCTCCTCAGAATACAAAGGCACACGGCGGGACTCCAGGGGTAATGAAAAACCCTGGCAGATCCATCCCAAGAAGCCCAAGAAATCAAAGAGTGACCTGGCTGTGTCCAACATTTCCCCACCCTCTCCCGAGTCTAAATCATTGCCTCGTTCAATACTGCGTCCTACCTGGGACTGGAGGACTAAACCTGAGAGCCGAGACTTTAATGAGCTCAATCACATACTGCAGGAGAGCAAGAAGCTTGGCAAAGCGCTGGAGAATCTGTCCCGCAGCATTGCTGTTTCTGATGACTTTGACCTGGACCCTCAGACGTATAACTCCGTACTGAGGCCTCGGGTGGTGGGCGAGTGGGTGGGCCGTGAGGAGGAAGATTCTGACCCCCTTGCGGCTGAGATGCTTCAGCCCCCAGTCCCAAGAGCCAAAACTGAGGGTTGGGCGAGCAAAGACAACAGTCCTGTTGGAAGCTTGAAAATGGAGAGTAAGGGTAAAGGACTAAAACAGCAGCAACAGAATCACAAGAAACTTCTGGCAGCCATGTTGTCTCAGGACTCGTTTGACTCCATGCCTGACTCGGCCCCCTCAGTCACTGAAGACGAGATGGAAGATGAGGATGATGCCATGGAGCTGCTAGAGGATCTGGATGACCTGCGAATGGAGGGGGTCACTGGCCTGTTGCCGTCTGGCAGTAAGTTCAGCCAGGGCCGCAGCTCCTACTGTTCAGAACCCCAGGCCAAAGTCACTCTCAACATCTGCTCAAGGTGTGCAAGGCTTCAAGGGGACAGTCTAACTGCAAGGCCTGAAGAGGAACCAGCACCCCATATCCCAGAGCAAGCAGTGCCAGAAATACCTTGTCCATTACCCGCGGTGACAGAAACCCTGACAGCAGCAGAAGATCTGCAGACTGCCTCTCAGGTGACAGGGCAGCGTCACCCTGTCTGGGCATCGGATGTGAAGCCGCTCAGAGGCACGAGCCCCCAGACGCCCAGACGTGCTCTGCAACTCCAGGACTCGCTTTTCTCCAAAGAACTGGAGAACATGGGCAAACATCTTGCCGAGGTGGAGAAGGACTTGGCCAAGCTGGCAGAGCAAGGGAAGCTGAACCGAAGTCCAAACAGTCCTCATAGGAGTTTGCTTTTAACCCCCCTCTTCCACACCACCAACACTCTGCCTGTGCTCGGACAGACGTCCAGACCACAGTCTCCCAGCAGCCTTTCCACAAAGACCACAGGCCTGCCCCTTCACAACACTAAGCCCACAAGCCTAGTCACGGGCCGGACATCTCCCAGCAACCCCAGCAGCCGTGCCCAGACCCCTAGTGGAGCACGGACGCCCAGCAGACCTTTGACCCCCAATAGTCTCATGATGCGCTCATTTACTGCCGGAAGCCACGGAAACACAGAACGCTTGTATGGTCGCTCTAGAAGCAGACCTGTCACGCCGACAGGACAGATAACCAGACCAATCCTCACACCGCCAGGCCTGAGCACTACAGATTTATAT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03315696_03388918.mRNA True 1635 mRNA 0.55 11 3315696 3388918

Neighbor

gene id symbol gene type direction distance location
CI01000018_03168822_03281088 PREX2 coding upstream 34608 3168822 ~ 3281088 (+)
CI01000018_03144746_03157987 NA coding upstream 157453 3144654 ~ 3158243 (+)
CI01000018_03009909_03030542 CSPP1 coding upstream 285087 3009909 ~ 3030609 (+)
CI01000018_02868921_02905963 NA coding upstream 409706 2868921 ~ 2905990 (+)
CI01000018_02864151_02865976 NA coding upstream 449718 2864151 ~ 2865978 (+)
CI01000018_03468481_03471726 NA coding downstream 79355 3468273 ~ 3471880 (+)
CI01000018_03482157_03507502 SULF1 coding downstream 92515 3481433 ~ 3508466 (+)
CI01000018_03513125_03558562 SLCO5A1 coding downstream 122444 3511362 ~ 3558720 (+)
CI01000018_03630815_03635622 NA coding downstream 241859 3630777 ~ 3635787 (+)
CI01000018_03714508_03725674 NA coding downstream 325590 3714508 ~ 3725930 (+)
G103688 NA non-coding upstream 181701 3114952 ~ 3133995 (+)
G103645 NA non-coding upstream 257177 3055389 ~ 3058519 (+)
G103646 NA non-coding upstream 273862 3041363 ~ 3041834 (+)
G103597 NA non-coding upstream 406883 2907768 ~ 2908813 (+)
G103608 NA non-coding upstream 488510 2826945 ~ 2827186 (+)
G104191 NA non-coding downstream 35363 3424281 ~ 3424688 (+)
G104199 NA non-coding downstream 48481 3437399 ~ 3437635 (+)
G104206 NA non-coding downstream 57927 3446845 ~ 3447072 (+)
G104219 NA non-coding downstream 178692 3567610 ~ 3567882 (+)
G104221 NA non-coding downstream 195426 3584344 ~ 3584573 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1330385 1924489 ~ 1985311 (+)
G102895 NA other upstream 1730034 1582913 ~ 1585662 (+)
G104258 NA other downstream 302171 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 981268 4368179 ~ 4375866 (+)
G104670 NA other downstream 1366883 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1827762 5216452 ~ 5222616 (+)
G106429 NA other downstream 3492693 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022889 C24H8orf34 coding NC_007135.7 CM002908.2 19210001 ~ 19404475 (+)