G103688


Basic Information

Item Value
gene id G103688
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3114952 ~ 3133995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU117950
CACCAGGTGCGGGTGGGTCCGGTTCATCTCAAACATCCAACTCTGGATCTCTTCCAAAGGATGGTACACTTCATAGTCATACTGCAATTCTGATCTGCGCTTCCTGGAGGAACGGTATCCGGTCTGTTTCTCAATTTCGGTTTGGAGATTGGAAATGAGCACCTCATAGTGGATGTGCGCTTGGTGAAGATGTCTTCTCAGCCATTGCGTCTTGTTTCGTCCCACATGAACGTCTACTGGGCTGTTCTCTCGAATCAGAGATGCACTGTTGGGCTGCCAAAGGTCCACTGTCAGGTTTTGGAAAAGCTGTTTGACTGCTTGAACCTCTGTGTTGCTGCTGGGGATTATTCTGAACACTTGATCACCAACGTAACGGTTGTTGTAGAGGTAAGAGTCGACAGGATAGAGCGCGGTGCTGAAAATGATAACGCATCCGAGTAAAACAGAACTGGACAAGCCTGTGATTCTCAATGCCATATTTAGTTATTTTATAAATAAACGGCGATTCTGCAGCAGTTAATCAGAGGCTGCGCTGTGCATATGGATGCTGAATGGAACTCATCCCAGGGTGAGGAACTGAGTGACTTTTCTGTCCTGTTTGTCCGCTCCTGGGACGGTTTCTTGAGGTAGAAGTGTGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU117950 True 639 lncRNA 0.47 5 3114952 3133995

Neighbor

gene id symbol gene type direction distance location
CI01000018_03009909_03030542 CSPP1 coding upstream 84343 3009909 ~ 3030609 (+)
CI01000018_02868921_02905963 NA coding upstream 208962 2868921 ~ 2905990 (+)
CI01000018_02864151_02865976 NA coding upstream 248974 2864151 ~ 2865978 (+)
CI01000018_02370124_02372215 NA coding upstream 742047 2370071 ~ 2372905 (+)
CI01000018_02344327_02354633 EZH2 coding upstream 759539 2344327 ~ 2355413 (+)
CI01000018_03144746_03157987 NA coding downstream 10659 3144654 ~ 3158243 (+)
CI01000018_03168822_03281088 PREX2 coding downstream 34827 3168822 ~ 3281088 (+)
CI01000018_03315696_03388918 NA coding downstream 181701 3315696 ~ 3388918 (+)
CI01000018_03468481_03471726 NA coding downstream 334278 3468273 ~ 3471880 (+)
CI01000018_03482157_03507502 SULF1 coding downstream 347438 3481433 ~ 3508466 (+)
G103645 NA non-coding upstream 56433 3055389 ~ 3058519 (+)
G103646 NA non-coding upstream 73118 3041363 ~ 3041834 (+)
G103597 NA non-coding upstream 206139 2907768 ~ 2908813 (+)
G103608 NA non-coding upstream 287766 2826945 ~ 2827186 (+)
G103606 NA non-coding upstream 295825 2818818 ~ 2819127 (+)
G104191 NA non-coding downstream 290286 3424281 ~ 3424688 (+)
G104199 NA non-coding downstream 303404 3437399 ~ 3437635 (+)
G104206 NA non-coding downstream 312850 3446845 ~ 3447072 (+)
G104219 NA non-coding downstream 433615 3567610 ~ 3567882 (+)
G104221 NA non-coding downstream 450349 3584344 ~ 3584573 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1129641 1924489 ~ 1985311 (+)
G102895 NA other upstream 1529290 1582913 ~ 1585662 (+)
G104258 NA other downstream 557094 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 1236191 4368179 ~ 4375866 (+)
G104670 NA other downstream 1621806 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 2082685 5216452 ~ 5222616 (+)
G106429 NA other downstream 3747616 6881611 ~ 6886325 (+)

Expression


Co-expression Network