CI01000018_03009909_03030542 (CSPP1)


Basic Information

Item Value
gene id CI01000018_03009909_03030542
gene name CSPP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3009909 ~ 3030609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03009909_03030542.mRNA
TCGCACATGCTCTCTCTCCCCATAAAAGAACGGAGATCAGCGAAGGAAAAGCTGCAAGATGAGAGGAACAAGGAGTATAATCTGTTTCTCCGAGGACAAGAGGAACCACAGAAAATAGGGAAATCTTCAAGCACTCCACAGGCCCTGGATCGTTTTGGCTCTATTACTCCAAAGTACCCTGCTGGTTCTCCAGAGGTACAAGTGCAAAGAGGCAGTCAGGGCCCAGAGAACATCACGTTCTCAAGGAGGGATGTTGCCACTCTAACTGAGCCCATTTCCGGAGTGCCTAAGGTATCAAGGCCACGGAGACACTGGGCAGAGACGCCGAATCGCTGGGGAGGCCCTTACCGAGATCACACCAGTTCTGATGAGGAGATAGAGCTCCCAGAGAAGGAAAGGCTTAGAAATGTACAGGAAGACACTGGTGCAACCAGGAGAGGAGGAAAACACGACAATAGCTCACACAGTCTACAAGCACCGGCTCGAGCGCAAAACAGATCTGTCAATGAGCAGAACATGACAGAGTTTGCTACAGGACTCATGATTGGTGCTGCTGAAGGGGATGAGGCCTCTCAGAGGAGGAAGGAACATTATAGACTTGAGCTGCTACAGCAAATAGCCGAGCAACAGAAGAACAAAAGGAAGGAAAAGGAACTTGAGTTGAGAGTGGCTGCAACAGGCGCTGTTGATCCAGAAAAAAAGCCAGACAGAATCAAACAATTTGGTGCAGTGACCCGGGAGTATGAGGGCAGGAGAAGGGATGTGCCTTACCACCCAGGGCTGGGTCCTGAGGTCTTCAGGGCTGACTCTGCCAGGCGGCTCAAAGAAGACAAACCTCCACAAGCACCAAAGGAGAGCGCACCTCCCGAGAGACCTCGTGTTGCTTTCCAGTCCCCGTCTCTGGACCACAGCACTGTCTTAAGCCGGCTGGCTAACACATCAGGCTTTGGTCTGGAGGCTGGAGCCAATGGTACCACCCCTGTTACTGAAGACAATTACAGAAGCCTCTCAAGAACCCTGGGGGAGATAGTTGCCCCAAGAATTACAGGTGTGCGTCCTCCGTTGGGTCCTTCCCTCGCAGACTCCTATCAAACTCCTTATGATAATGCATATTACTATTATGGAGCCAGAAATCCTCTAGACCCCAATCTGGCCCACTATGGACCAGCAGGGGATCAACAGTCACACATCCCTCCAGAAGCACATTGGCCAGTTCTGCAGCCTCCCTCTGGAGGCCTCACACAAGCGATCAGCCATGCTGGAGTTGTTCCCTCAGGACCATCGTTCTTTTCTCACAAGAGGCTGCAGCAGCCCAAGGAAAGTGCTGTTAGCCATCAGGAAGCCCTTAAGCAGCAGATTCAAGAACGACAGCAGAGACGACATCGTGAGAAGGTGGAAACAGAGCTGTATGATGCTAAATTAGAGGCTGAGATGAAGGCCTACGAGCCCTGGGGAAGAGGTGGAGGAGGAGCCCCTCTTAGGGACAATCATGGAAATCTTATCAGTGATTTGAAACAAATGCATAAATCAAATGTGGAAGCTTATGATTCTGGAGGCAGAGTAGCCCAGATTCCAGTGGCTTCTAGGACAGGTAACAGAAACTTCACCTCATGCATCAAGTATCTGCAGCCATTGAATTACAATTTGACTCACAATCAAAAAAAACAGCTTCATGACCAGGAAAAGTACAAAGATTGTTTGAAACAACAGGTATGGACCTACTTGTCTCATTCAGTCAGCTTTGTATTACGTTGTCTGTGCTTTTGGCCTGCCATTTCACTTTGTCATCATATTTGGCATGAACAGATCGAGGAAAAGAGGAGAAAGGAGGCAGAAGAGAGGGAGCGGAGCAGGCTCGAGGATGAGAAAGAAGAGAGGCGGCTGGCCGAACAGCGAGCTCGGATCCAAAGGGAGTTTGAGGAAGAGCAGGAGCGGAAGCGTCAGAAAGAGAAAGAGCAAATAGCCAAAAATGAGGAGTTGATCAGGCAAGCCGAAGATCGCCGTAAAGAGGCTGAGAAAATGAAGAAAGAAGCGGAGGAGAAAGAGAATGAGGCCCTGAGGAAGAGACTCGAGAGAGAGAAGCAGACACATATGGAGGAGGTCCACAGGGCACCGTCACCACCCCTACCAACCTTGCAGAAGAAACTACGTCAGCAGATGCCTAGACCTCCATCGCTGGAGAGCCACCGCTCTTCTGCAACTGTGTCTATGCGCTCGATGTCAGCACCACATTCTCCACCGGTGCCTGCCCGCAGGAACGAGATCAGGGCCACAGAAGAAAAGCAGACAGTAATCAGGGAGTTATCAGCCTTGCGTAGGCAGCTGCGGAGTGAACAGAGACGTCTGGAGGGACAGTTAATGCAGTCCAACGGAAATGACCACACCCCTCCTGTTCATGGCAGGTATGGTAATAAACAAACATCCTGCACAGACACATGCAGAACACGTGTGTCAATTAGACTCTTTAATGAAGTTCTTTCCCCTCCACAAACAACGCCAAGAGAACACCTCCTGGAGGATGTTTTTGAAGTGGCAAGACTACGCAAAGAAGTGCCCATCAGGAGGCCGGCTTCCCACACCACCGCAGCAGCCAACATGCACAACCTACAAGAGTTTAATCATCTGAAGTACAGAGATGGTGCATCTCGTGAGGAGGTGCGGCAGGCATATCCTGACCCCCCCAGTGACGATCACAGTCTAGATATCCAGCAACAGGCTCTATTACGACAACAGCAACGAACCATAAACAGCCTGAGGAGGGGCAGACCTGCTGGAAAGCAGCATCTTGAGCAGAGGCTGAATTCTGCAGAGAATCCAGGCAGACGCTTGCTGTTAGACTCAGAGAGTGCCTTTATTGTGCACTATTTGAGGGAAGGCCCTTTTGAAGATGCTGTCCACAGCAGAATTATGCAGGATGTGGTAAACAGGTACACTCGACCTGACAGTGGTCCTGACAGCCAGTCCCTGCACTCACTAACCAGCACAGAAATAGAGCGGCTGAGGGAGCGCACAAAGAACAAGATGACATCGCTGAACAACATGAGAGAACATGACTGGAGATCAGGGGAAGTGTCAGCTGAGGAAGGGGAGGAGCTATGGTCACAGACTCCTTCAACCAACCGGCGTGTTTCCATTGACACCATTGCCACAGACCCCTGGTTACGTCCTAGTTCCTCAGATACTCTGAAGAGGTTCATGGGTGGTCACAGGCCATCCAACCGAAACCATGCAGGCCAGGATTGGGAAGGGCCGTCCACTTACCATGGTTAAATCTCATTCTGAATTCTTATGCCAGTTTCGCAACTTTGTACAGCTATTTTATACGGAACAAGTTTAT

Function

symbol description
cspp1 Involved in positive regulation of cytokinesis. Located in centrosome and spindle pole. Implicated in Joubert syndrome 21.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03009909_03030542.mRNA True 3337 mRNA 0.50 24 3009909 3030609

Neighbor

gene id symbol gene type direction distance location
CI01000018_02868921_02905963 NA coding upstream 103919 2868921 ~ 2905990 (+)
CI01000018_02864151_02865976 NA coding upstream 143931 2864151 ~ 2865978 (+)
CI01000018_02370124_02372215 NA coding upstream 637004 2370071 ~ 2372905 (+)
CI01000018_02344327_02354633 EZH2 coding upstream 654496 2344327 ~ 2355413 (+)
CI01000018_02338151_02342822 PDIA4 coding upstream 667020 2338151 ~ 2342889 (+)
CI01000018_03144746_03157987 NA coding downstream 114045 3144654 ~ 3158243 (+)
CI01000018_03168822_03281088 PREX2 coding downstream 138213 3168822 ~ 3281088 (+)
CI01000018_03315696_03388918 NA coding downstream 285087 3315696 ~ 3388918 (+)
CI01000018_03468481_03471726 NA coding downstream 437664 3468273 ~ 3471880 (+)
CI01000018_03482157_03507502 SULF1 coding downstream 450824 3481433 ~ 3508466 (+)
G103597 NA non-coding upstream 101096 2907768 ~ 2908813 (+)
G103608 NA non-coding upstream 182723 2826945 ~ 2827186 (+)
G103606 NA non-coding upstream 190782 2818818 ~ 2819127 (+)
G103604 NA non-coding upstream 206573 2803046 ~ 2803336 (+)
G103533 NA non-coding upstream 231855 2617613 ~ 2778054 (+)
G103646 NA non-coding downstream 10754 3041363 ~ 3041834 (+)
G103645 NA non-coding downstream 24780 3055389 ~ 3058519 (+)
G103688 NA non-coding downstream 84343 3114952 ~ 3133995 (+)
G104191 NA non-coding downstream 393672 3424281 ~ 3424688 (+)
G104199 NA non-coding downstream 406790 3437399 ~ 3437635 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1024598 1924489 ~ 1985311 (+)
G102895 NA other upstream 1424247 1582913 ~ 1585662 (+)
G104258 NA other downstream 660480 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 1339577 4368179 ~ 4375866 (+)
G104670 NA other downstream 1725192 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 2186071 5216452 ~ 5222616 (+)
G106429 NA other downstream 3851002 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location