G103606


Basic Information

Item Value
gene id G103606
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2818818 ~ 2819127 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU117865
AGCCAACCTGTGTGTTCCTGCTGTTAGTCTGAGAGTGACTTCGCAAGCCTTTGAAGAGCTTTTGTTCTACAGTGCTGGCTTTATGGCACCTTACAGCGAGGCCGCGAGCTTTCCCAGAGTGAGCTTCTCGAGCTGTTATATAGCTCTCAACTGCTGTTTTCACAGCATTATTTGCCCCGTTGGTTTGCGATTTGGGCCGGTTCCTCTGTGTGTGTGACTCAGGGAGTGAAAAGTGTACCTGCAGTCACATCGCGGCTGTTCCCTGTGTGCTTCGGCACAAAGAACAAGAGCTTCTAAAAGAGCTTCACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU117865 True 310 lncRNA 0.50 1 2818818 2819127

Neighbor

gene id symbol gene type direction distance location
CI01000018_02370124_02372215 NA coding upstream 445913 2370071 ~ 2372905 (+)
CI01000018_02344327_02354633 EZH2 coding upstream 463405 2344327 ~ 2355413 (+)
CI01000018_02338151_02342822 PDIA4 coding upstream 475929 2338151 ~ 2342889 (+)
CI01000018_02332183_02336865 NA coding upstream 481895 2332183 ~ 2336923 (+)
CI01000018_02327424_02330396 NA coding upstream 487858 2327424 ~ 2330960 (+)
CI01000018_02864151_02865976 NA coding downstream 45024 2864151 ~ 2865978 (+)
CI01000018_02868921_02905963 NA coding downstream 49794 2868921 ~ 2905990 (+)
CI01000018_03009909_03030542 CSPP1 coding downstream 190782 3009909 ~ 3030609 (+)
CI01000018_03144746_03157987 NA coding downstream 325527 3144654 ~ 3158243 (+)
CI01000018_03168822_03281088 PREX2 coding downstream 349695 3168822 ~ 3281088 (+)
G103604 NA non-coding upstream 15482 2803046 ~ 2803336 (+)
G103533 NA non-coding upstream 40764 2617613 ~ 2778054 (+)
G103532 NA non-coding upstream 279058 2539546 ~ 2539760 (+)
G103531 NA non-coding upstream 279703 2538897 ~ 2539115 (+)
G103530 NA non-coding upstream 284687 2533642 ~ 2534131 (+)
G103608 NA non-coding downstream 7818 2826945 ~ 2827186 (+)
G103597 NA non-coding downstream 88641 2907768 ~ 2908813 (+)
G103646 NA non-coding downstream 222236 3041363 ~ 3041834 (+)
G103645 NA non-coding downstream 236262 3055389 ~ 3058519 (+)
G103688 NA non-coding downstream 295825 3114952 ~ 3133995 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 833507 1924489 ~ 1985311 (+)
G102895 NA other upstream 1233156 1582913 ~ 1585662 (+)
G104258 NA other downstream 871962 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 1551059 4368179 ~ 4375866 (+)
G104670 NA other downstream 1936674 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 2397553 5216452 ~ 5222616 (+)
G106429 NA other downstream 4062484 6881611 ~ 6886325 (+)

Expression


Co-expression Network