CI01000018_03168822_03281088 (PREX2)


Basic Information

Item Value
gene id CI01000018_03168822_03281088
gene name PREX2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3168822 ~ 3281088 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03168822_03281088.mRNA
GTACTTCTTCATCGCCTCAATCAGTATGCTGTGTCTAAAATTGATAAGAATATCACAGAGGAGACTGTCAAGGTGCTGTTTTCTAACCTGGAAGAGATCCTGTCTGTGCACAGGGACTTCCTGTCCATGGTAGAAGAGCTTCTGCAGCCTGACCCCAGCCCGTATCATGAAGTGGGCCGCTGCTTCCTGCACTTTAGAGGAAGGTTTCAGATTTACGACGAGTACTGTGGGAACCACGAGAAAGCCCAGAGGCTTCTGCTGGAGCTCAATAAGATCAGGACAGTACGCACGCTTCTGCTGAACTGCATGTTACTGGGCGGCAGGAAGAACACAGAGGTTCCATTGGAGGGCTACCTGGTTGCACCCATCCAGAGGATCTGTAAATACCCGTTACTCCTGAGAGAGCTGCTGAAAAGAACCCCAAAGAAACACAATGACTACTTGATGGTGCAGGAGTCGCTGCAGGTGATGAAAGCCGTTTGCTCCAGTATCAATGAGGCCAAAAGGCAGATGGAGAAACTGGAGGTGCTGGAAGAGTGGCAGTCTCATATTGAGGGCTGGGAGGGCTCTAACATCACAGACAGCTGTACGGAGATGCTCATGCAGGGAGTTCTGCTGAAGATCTCTGCGGGGAACATCCAGGAACGCATCTTCTTCCTCTTTGACAACTTGCTGGTGTACTGTAAGAAGAAGAACAGGCGTTTGAAAAACAGTAAGACTGCCACTGAGGGTCCTCGTTACCTGTTTCGAGGCAGAATCAACACTGAGGTCATGGAGGTGGAGAATGTGGATGATGGAACAGCGGATTACCACAGCAGCGGGAACATCGTGAACAACGGCTGGAAGATCCACAACACAGCAAAGAACAAGTGGTTCGTCTGCATGGCAAAGACACCGGAGGAGAAGCAGGAATGGCTGGAGGCCATTTTAAAAGAGAGAGAAAGACGAAAAACATTGAGACTGGGCATGGAGCAGGACACCTGGGTGATGATATCTGAGAAAGGCGAGAAGCTTTATAACCTCATGAGTAAACAGGGCCACCTCATTAAGGACCGCAAGCGCAAACTCACCACCTTCCCAAAGTGCTTCCTTGGAAGTGAGTTTGTGTCGTGGCTGATGGAAATCGGAGAGACCAATAACCCTGAGGAGGGGGTACATTTGGGTCAAGCCCTCCTGGAAAATGGCATCATCCACCACGTTACAGACAAGCACCAGTTTAAACCGGAGCCGGTGCTCTATAGGTTCCGCTATGATGACGGCACATACCACCCTCGCAGTGACATGCAGGATGTCATCTCCAAGGGTGTGAGACTGTTCTGCCGACTGCATAGTTTATTCACACCGGTGATCAGGGATAAGGATTATCATCTTCGAACGTATAAATCGGTGGTAATGGCCAACAAGCTGATCGACTGGCTGATAGCACAGGGTGACTGCCGAAGCAGAGAAGAGGCGCTGATCTTGGGGGTGGAACTGTGTGACAATGGATTCATGCATCACGTTTTGGAGAAAAGTGAATTCAAGGATGAACCTCTTCTTTTCCGCTTCTTCGCTGATGAGGAGATGGAAGGTTCCAACACCAAACACAAGCCCATAAAACACGATCTAAAAATAGTGGAGAATGTCATCGCCAAGTTGCTGCTGATAAAGCCAAGTGAAGGAGGTTATGGCTTCACGCTAGAAGATCGAAACAGAGTACCCATCGTCAAATCAGTGGAGAAAGGTTCCCATGCTGAGATGGCTGGTCTGGAAGTGGGGAAAAAGATCTTTGCCATTAATGGGGACCTGGTCTTCTTGAGACCTTTCCAGGAGGTGGAAAACTTCCTAAAGCAGTGCTTCCACAGCAAAGGCCCCCTCAGAGTACTGGTCAGCACCAAACCCAGAGAGACTGTGAAGATCCCAGACTCTGCAGACGGTTTGGGCTTTCAGATCCGGGGATTCGGCCCATCTGTGGTGCATGCGGTTGGCAGAGGCACTGTTGCAGCAGTTGCCGGCCTTCACCCAGGCCAGTGCATCATTAAAGTGAATGGTATCAATGTGAGCAAAGAGAGCCATGCCAGTGTCATCGCCCATGTCACGGCCTGCAGGAAGTACCGGCGACCCACACAGCAAGACTCTATTAAATGGGTATATAACAACAGCGAGAGCGCACAAGAAGACCACCAGAGAACCAATCAGAAGCCTGCCGCAGGGGAAAACGGAGATGTGTTTGAGTGTAAAGTTGAAGAAGTCATGGACAAGTTCAACACCATCGCCATAATAGACGGAAAAAAAGACCACGTTAGCCTGACAGTGGATAACGTGTATCTGGAGTACGGCGTCATGTACGAGTATGACAGCACTGCCGGGATGAAGTGTCACGTCTTGGAGAAAATGGTGGAGCCAAAAGGCTTTTTCAGCCTCACGGCCAAGATTTTAGAGGCCTTGGCCAGGAACGATGAGCAGTTGGTGCAGACCTGCAGCCGACTGAGCTCCAGCACAGAGCTCATCCCAGAGGACCTGCAGACTAGATTCAGTGCCATGTGCGGCGAGAGACTGGAGCATATCAATCGGAGAATCACCAATTACAGGAAGTTTTCACGAGTTTTGAAGAACCGGGCTTGGCCTACATTCAAGCAGGCGAAGACCAAGGTTTCCCCTTTACACAGCAGTGACTTCTGCCCCACCAACTGTCACATCAATGTAATGGAGGTGTCTTATCCCAAGACCACTACTTCCCTTGGAAGTGCCTTCGGAGTCCAGCTGGACAACAGGAAAAATACTCTGGAGAAAGGAGGCCGTAATTCAGAGCAGGGTAAGCTGAACCCCATGGTTAACGTCCAACATAGTATCACCAGCATGGCTGCCCCATCTGGACACAGTCTGAGCAGGGCTGAAGGTCACGGTCTGCGATTCCTGCTACGAGAGGACGACCTGCTCATCCTGGACGCCTACCACAAACTTCTGACCAAACTCACCACTGTCGTCAAAGAGATGGAGTGCTACGCCGCCCAGATTCATGATTTGCTCTCCTCTATCACACATCCCACCGGGTCTGAAGGGAAGCCCACTGAGAGCTACATTTCAGCTGAGAGTGAGAGTGAGAAAAGTGAACGCAACGGGAAGAAAGTGTGTTTTAATGTGACCGGAGACGAGCAGGAGGACTCGGGTCACGACACTATCAGCAACAGGGACTCCTACAGTGATTGTAACAGCAACAGAAACTCCATAGCGTCCTTCACCAGCATCTGCAGCAGTCACTGCAGCTCTTATGTGCACAGCGACGAGATGGACTCAGGGGACGAGATGCCGACCAGTGTGTGGATATCTCACGACAAACAAAAGAAGCTACATGGCTTCCTGGAGCATCTCTTCAGCCAGGTGGAGTCCATCACCAGTTTGTTGAAAGGGGCAACCGTGACACGAGCCTTTGAACAGACAAAGTGTTTCACTCCGGGACGAGGACTTCAAGAGTTCCACCAGGACATGGAGCCCAAGCTTAACTGCACCAAGAAACTGCGGCTTCATGTCAAGCAGGATCCGTGGAACCTGCCCAGCAGCGTTCAGGCTCTCACACACACTATCGCCAAGTTTGCGGAAGATTTACCACTATATTTAACTCTCTTTCTTTCTCTCTCAGACTCAGAGATTCAGCTGAGGAGGGATATGGTGTTCAGTCAGAGTCTGGTGGCAGCAGTTTGCTCTTTCTCAGAGCAGTTGTTGGCCGTGTTAAATCAAGCTCTCGGCTCTGAGAGTGAAAGTCAGGAAGCCAGTCGCCGCTGGCTGGAGCAGATCTCCTCTGCTGGTCTTCTGTTCCATTTCCAATCCCTGCTCTCCCCCAACTTGACTGATGAACAGGCCATGCTAGAAGATACACAAGTCGCTCTCATAGACCTGGAGAAGGTCACCTTTTACTTCCGGCAGTTTGAAGGAGAGCCTCTTGTTGCCAACATGCCCATCTCATACCAAGTCGAGGGCACACGGCAGGCTTTGAAGGTCTGTTTTTACCTGGAGGCGTTCTACTTCCAACAGTTACCCCAGAGACTAAGACATGGTGGTAGCTTCAAAATCTACCCCGTCCTGTTCACCCAGGCCTTGGAGAGCATGGAGGGATATTATTACCGAGAAAATGTGTCAGTAGAGGAGTATCAGGCCCAAATCAATGCTGGATCTCTGGAGAAGGTCAAGCAGTACTACAAGAGACTCCGGGCCTTTTATCTGGATAAATCGAACCTTACCCCAAGCTCGGCTCCCAAAGCAGCTTTTATAGACAAGCTGATGCGTCCTCTGAATGCTCTGGATGAGTTGTACAGATTGATGGAAAGTTTTATCTCGTGTCGGCGGACGGCTGCTTGTCAGTTCACGGCCTGCGGAGCGTCTGGAGTCGGGCTGCTCACCGTGGCCTCGGAGCTTTGCAGCCGCCTGGGAGCGTGTCACATCGTCATGTGTAACAGCGGAGTACACCGTTGTACGCTAAGTGTTACGCTGGAACAGGCCATTCTTCTGGCCCGGAATCATGGCTTGCCCCCACGATGCATCATGCAGGCCACTGACGTCATGAGGAAGCAG

Function

symbol description
prex2 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Klatskin's tumor. Orthologous to human PREX2 (phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2).

GO:      GO:0005089, GO:0035556, GO:0005085, GO:0035023

KEGG:

id description
K17588 PREX2; phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03168822_03281088.mRNA True 4548 mRNA 0.51 36 3168822 3281088

Neighbor

gene id symbol gene type direction distance location
CI01000018_03144746_03157987 NA coding upstream 10579 3144654 ~ 3158243 (+)
CI01000018_03009909_03030542 CSPP1 coding upstream 138213 3009909 ~ 3030609 (+)
CI01000018_02868921_02905963 NA coding upstream 262832 2868921 ~ 2905990 (+)
CI01000018_02864151_02865976 NA coding upstream 302844 2864151 ~ 2865978 (+)
CI01000018_02370124_02372215 NA coding upstream 795917 2370071 ~ 2372905 (+)
CI01000018_03315696_03388918 NA coding downstream 34608 3315696 ~ 3388918 (+)
CI01000018_03468481_03471726 NA coding downstream 187185 3468273 ~ 3471880 (+)
CI01000018_03482157_03507502 SULF1 coding downstream 200345 3481433 ~ 3508466 (+)
CI01000018_03513125_03558562 SLCO5A1 coding downstream 230274 3511362 ~ 3558720 (+)
CI01000018_03630815_03635622 NA coding downstream 349689 3630777 ~ 3635787 (+)
G103688 NA non-coding upstream 34827 3114952 ~ 3133995 (+)
G103645 NA non-coding upstream 110303 3055389 ~ 3058519 (+)
G103646 NA non-coding upstream 126988 3041363 ~ 3041834 (+)
G103597 NA non-coding upstream 260009 2907768 ~ 2908813 (+)
G103608 NA non-coding upstream 341636 2826945 ~ 2827186 (+)
G104191 NA non-coding downstream 143193 3424281 ~ 3424688 (+)
G104199 NA non-coding downstream 156311 3437399 ~ 3437635 (+)
G104206 NA non-coding downstream 165757 3446845 ~ 3447072 (+)
G104219 NA non-coding downstream 286522 3567610 ~ 3567882 (+)
G104221 NA non-coding downstream 303256 3584344 ~ 3584573 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1183511 1924489 ~ 1985311 (+)
G102895 NA other upstream 1583160 1582913 ~ 1585662 (+)
G104258 NA other downstream 410001 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 1089098 4368179 ~ 4375866 (+)
G104670 NA other downstream 1474713 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1935592 5216452 ~ 5222616 (+)
G106429 NA other downstream 3600523 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022888 prex2 coding NC_007135.7 CM002908.2 18948665 ~ 19207056 (+)