CI01000018_03482157_03507502 (SULF1)


Basic Information

Item Value
gene id CI01000018_03482157_03507502
gene name SULF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3481433 ~ 3508466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03482157_03507502.mRNA
CCATAAAATGTGATTGGCTGGGTGTGGGCCAGTGCAGCCCCTAATAGCCAATAGCAAAGCCTCAATAGTACTGAAGTAGTGTGACTGATTAGAAAGAAAGAACTGGCTTGTCTGCACACACGGAGAGAGACACTCAGGCCTCTCTGACTTGAAGAAAGTGTCTGTAAATATGAGTGCAAGACTAAAGTGAAGATATTGGGTGTATTGATGCCACCCGTGATGCTGCTAAGCTAAGAACTGTACAGGTAGGGTTTATAGTGTTTGTTTTTTACTGTTCGTTATGAATAATGATTCAGCTAGTGTTTTTTTTTAAAGTGTTGATTTTGGTGGGAGCACGTCCTGGAAGCATATTGGAAGTTTTAATATGTGCTGACTCCTTTTAAGAGGGTGTTTTATGTTTATTTTCAGTGCAAAGGTTGAGATTTTCTATGGTCTGTTCCGTTACTTGTGGATGTGAAAATAGATGGCATCAAGCTTAAAACAGATGCTAATGATTTATTACAAAACGCAAACAGTGATCTGGAATTGTCATTTGTCTTGCAAAGGAAGGAAAAGTGGTTCTTTTTAGTCTCTCTCCAATTTCTGTTAACCAAAGTAACATTTGTTTTGACCTCTTTGGAAATCCCAAAGCATTAACATCTCTTTGCTTTTTTCCAAACAGATTACCTTGTGAGGATTCCAACCTTCTGATTTGTGTTCGGACGCCCCGGTTTGCAGTCCCATGATGCAGCTAGTGAATCTGGCTTGGATGATGGTCCTGACCACCCCACTGGTCTGCTTTGGTTTCACCACCCGCGGTCAGGGCCTGCGTGGGCGGGTTCAAGGTGACCGCCGAAACATCAGACCCAACATCATACTCATCATGACAGATGACCAGGATGTGGAGTTGGGCTCTTTGCAGGTGATGAACAAAACTCGCAAGATCATGGAGGACGGTGGAACGTCATTCACAAATGCGTTTGTAACTACGCCCATGTGCTGTCCATCACGCTCTTCCATGCTGACTGGGAAGTATGTCCACAACCACAACACGTACACCAACAACGAGAACTGTTCCTCGCCTTCATGGCAAGTTCAGCATGAGCCACGCTCCTTTGCCGTTTATCTCAACAACACTGGATACCGAACAGCTTTCTTTGGGAAGTACCTCAATGAGTATAACGGCACCTACATCCCACCTGGGTGGCGTGAATGGGTGGGGCTGATCAAAAATTCCCGTTTCTATAATTACACCGTCTGTCGGAACGGGAACAAGGAGAAGCACGGTGCAGATTATGCCAAGGACTACTTCACTGATTTGATAACCAACGACAGCATCAACTACTTCCGAATGTCCAAGCGCATGTACCCGCATCGGCCGGTGATGATGGTGATCAGTCATGCAGCACCTCATGGCCCCGAGGATTCAGCACCCCAGTACTCCGAGCTCTTCCCAAACGCTTCCCAGCACATCTGGGTGAAGAGTTCAGTGAGCGGACAAAGACGGACTGAGGAGGAAAGGGCAGAAGCCATCCACTCAGACAGAATGGAGCTTTCCTGTGGCCATCACTCATATGTGACACCAGGCACAAGAGTCTGGTCTGGAAAGCAAAGGAAGGCCATGTCTTTCAGCTGTGGAGGGAGGCCAACTGCAGTCAACAGAACTCCCAGCTATAACTACGCACCAAACATGGATAAGCACTGGATCATGCAGTACACCGGCCCGATGAAGCCAATTCACATGGAGTTCACCAACTACCTGCACAGGAAGAGGCTCCAGACGCTGATGTCTGTAGATGACTCGGTGGAAAAGATATATAATGCTCTGGTCGACACTGGGGAGCTGGATAATACCTATATCATTTACACAGCTGACCATGGTTACCACATTGGCCAGTTTGGCCTAGTCAAAGGGAAGTCTATGCCGTATGATTTTGACATCAGAGTGCCGTTTTTTGTCAGAGGTCCTAATGTGGAGCCAGGGGCAAGGAACAACCATCTTGTGCTAAACATTGATCTAGCACCCACAATCCTAGATATAGCTGGCCTGGACACTCCACCCGATATGGATGGAAAATCTATCCTGAAGCTTCTGGAACAGGATAAGACTGTAAATAGATTTAAACCCAACCGGAAACCCAAAGTCTGGAGGGACACATTCCTCGTGGAGCGGGGTAAAATCCTGCGCAAGAAAGATGACTCAGGAGGCAACTTGAATACACAACACTCCAACAGCTTACCCAAATACAAGAAGCTGAAGGAAGTGTGTCAGCAGGCTGAGTTTCAGACGCCCTGCGAACAACCAGGACAGAAATGGCACTGTGTGGAGGAGGTCAGTGGGAAGTGGCGTTTACAGAAGTGTAAGGGCTCCCTGAAGGAGGGATCCAAGAAAAGAGCGAGGAGTCTGCGCTCTCGAAGCTACGAGGGCCGCGAGAAAGACTGCCACTGTGGAGAACGGCCTTACAAAGCGGCCAAGGCAGCACGGCGGGCTCACAGACAGTTTGCCCAGAGCAGTAATCCACGCTACAGACCTCGCTTTGTGCACACGCGGCCGGCCAGATCCCTGTCAGTGGAGTTTGAGGGTGAAATCTATGATGTGGACCTGCAGGCTGATGATAAAACCCCTCTTGAGCCTCGACCAATCAGCAAACGGCACTATGAGCCTGAGGGAGGTATTGATTCGGACTTTGGGCTGGAGTCTGATGATGGATCGGAGGAGATGCAGTCGGATGACACTAATGCTGTGGGATACCCCAATTCTCTCAAAGTCACACACAAATGTTTCATATTAATGAATGACACTGTGCGCTGTGAAAGAGAGATTTACCAGTCTTCCAGAGCATGGAAAGACCACAAGAACTTTGTGGACCAAGAGATTGAACTTCTCCAAGATAAAATGAAGAAACTGCGTGAGGTTAGAGGTCATTTGAAGAGGAGGAGACCAGATGAGTGTGACTGTGGAAAGAAGAGAAAATTGTTTTTGCTACACTCTCAAGTGGGCGGCTTCTGTGCTTGCACAAGCTCTAACAACAACACATACTGGTGTCTGAGAACTATTAATGACACTCACAACACGCTCTTCTGTGAATTTGCAACTGGCTTCCTGGAGTATTTTGACCTAAACAGTGACCCGTACCAGTTAACCAACGCAGTTTATACAGTGGAGAGGGACATTCTGAGCCAATTGCATTTACAGCTGATGGAAATGAGGAGCTGTCAAGGCCACAAGCAGTGCAACCCCAGACCCAAAAGCTCAGATGCAGAACACAACCAGCCTGGGACGTCCACAAAGGTTAACCTGCCCAATTTCACAGAGGACTTCGACTGGCAAGGACTGGCAGATTTGTACAGCGTGAATGAGAGTCTGTACGAACACAGGCGCAACTACAGTCCCGTTCTGGATGACTGGATGAACTTTTGGAAGGATGTAGATAGAATGTTTGCACTGCTGAGAAATTTAAAGACACTCAACCAAACCGATAAGCTTGACCCCCTGGCTGAGCTGGGCTCCGGGGTCCAGGAGGAGGCCAGCGGTGCTGGATCCCCCATCCAAGAGGAACGGCCCCCGAGCCCCGTCACCACAGGTCCCCCAAGGCCCAAAACACTTCAAGAGAGTCTCTTAAAGTCTCTTAATGAACTCCCAGAGGGCCGCCCAACCAAACCAAGCGCTCTTCCAAGAGGAGATACCTGGGTTCAACAGCTGGAAAACGAGTTGGACAATGACGGAATGACGTTTAGCGGCAACGGAGTCACCGAACTGGAGACCCACCATGACTTTGTGTTGCGCAGCTCTAAAATTCTGGATCTCCACCTGCAGGAAGAAGAGGAGGACATTTTTCAGGCCCAGGGTTACCTTCTGCTCTCGCCACCGCCAGCCAGACCTCCAGAGCCAGCTAGGGAAACACTTCCAGCATGGCGAGAAACCATACATGAGAGGTGGAACGGAAGCGTCAAACCTTTTACCCACAAGCCCAGGGACGTTCAGGAGGGCAGCGCCGCGGGCCCATCCCATTGAGAATGGACTGCTGCCATGCACTGTGAAGCCAGCCAACTCAGAGACACTAACCCCACGGAGCATGGACTGCTCTCCTGTATAATCCAATGAATTATTTTATTTTTTACAGGTGCTTCCATTTATTAGAAATCAGTGTTATGTATTTTGTAAAAAAATATATATATTATATATATATATAAATATAAAAATTTAGAGGTAAAATATTGGATGCATCTTAAATGTTGGGTTTGGTTTTAAATCTCAAGTGGGAAAATGACATCAAAGTAAGGTTTTAATATATTTTTAATCAAAAAAGAAAAAGAAACAGGTTAAAATGGTGAAACCATTGCATTCAGTTTTGAATTAACCACATGCAGATTGTTTCCCCAAGATATTTGATGCACTTTTTTCCCATGTTTCTCGACTTCAACGCATTCTTCAGTCTCATTTAGACATAAACAACTCTGTTGACACCAACACAAGTCATTATTTGTTGGATTCACATTATCGTTAATGAGTGTTGTTGTTCTCCTCTTCTATGTTTACTTCAGCTTATTGGGTTTAGTTCACTGTTTACACTAAAACACGTTTTTTATACACTTGGATTGTGGGTTTAATGGTTTGACTTCTTGGTGAAATGCTTTTCTCACAAATTTTGTGTAGTTCAGTTGTATTCGGTCCATATAATGTAAGAAGGGCATTCACCATAAGTGCTTTTATCATGGATGACTCTTAAGATTTTCACTAACCCACAGTAATAATTTTTAAAATGGCTTGTTTCATTTGTGAAGAATGTGAGATGGGCATTTATTCAGAATTTTGACCATTTTTGTCCTGTATTTTAGAATTAAAATGTCTAAACTCATTTTTGAAGAAATTTGTTTGAATATGAGGTGACCTGCCAAATTTGCAAATATTACGTTACTTTTTAACCAATGGTGTTGGAACAATTCTGGCTTCTGGAAAGCCAAGAAGCTGTTTTGAA

Function

symbol description
sulf1 Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of or within with a positive effect on epithelial structure maintenance. Acts upstream of or within several processes, including neuromast deposition; regionalization; and vasculogenesis. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including cardiovascular system; central nervous system; head; hypochord; and somite. Orthologous to human SULF1 (sulfatase 1).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K14607 SULF; extracellular sulfatase Sulf

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03482157_03507502.mRNA True 4958 mRNA 0.46 18 3481433 3508466

Neighbor

gene id symbol gene type direction distance location
CI01000018_03468481_03471726 NA coding upstream 9553 3468273 ~ 3471880 (+)
CI01000018_03315696_03388918 NA coding upstream 92515 3315696 ~ 3388918 (+)
CI01000018_03168822_03281088 PREX2 coding upstream 200345 3168822 ~ 3281088 (+)
CI01000018_03144746_03157987 NA coding upstream 323190 3144654 ~ 3158243 (+)
CI01000018_03009909_03030542 CSPP1 coding upstream 450824 3009909 ~ 3030609 (+)
CI01000018_03513125_03558562 SLCO5A1 coding downstream 2896 3511362 ~ 3558720 (+)
CI01000018_03630815_03635622 NA coding downstream 122311 3630777 ~ 3635787 (+)
CI01000018_03714508_03725674 NA coding downstream 206042 3714508 ~ 3725930 (+)
CI01000018_03727066_03727226 NA coding downstream 218600 3727066 ~ 3727308 (+)
CI01000018_03865690_03869961 NA coding downstream 356845 3865311 ~ 3870063 (+)
G104206 NA non-coding upstream 34361 3446845 ~ 3447072 (+)
G104199 NA non-coding upstream 43798 3437399 ~ 3437635 (+)
G104191 NA non-coding upstream 56745 3424281 ~ 3424688 (+)
G103688 NA non-coding upstream 347438 3114952 ~ 3133995 (+)
G103645 NA non-coding upstream 422914 3055389 ~ 3058519 (+)
G104219 NA non-coding downstream 59144 3567610 ~ 3567882 (+)
G104221 NA non-coding downstream 75878 3584344 ~ 3584573 (+)
G104229 NA non-coding downstream 106838 3615304 ~ 3615594 (+)
G104249 NA non-coding downstream 164395 3672861 ~ 3673062 (+)
G104255 NA non-coding downstream 179534 3688000 ~ 3688300 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1496122 1924489 ~ 1985311 (+)
G102895 NA other upstream 1895771 1582913 ~ 1585662 (+)
G104258 NA other downstream 182623 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 861720 4368179 ~ 4375866 (+)
G104670 NA other downstream 1247335 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1708214 5216452 ~ 5222616 (+)
G106429 NA other downstream 3373145 6881611 ~ 6886325 (+)

Expression


Co-expression Network