G104229


Basic Information

Item Value
gene id G104229
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3615304 ~ 3615594 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU118544
CCTAGATGTACTACGGGATTTATGTATGTCTATTTATGCAGCAGCAGCATATCTTACATGCTTACAGCAGCGTGTCTGTGTATATATTAGCAGTAGCAAGTCCATACTTGCTCTGCAGCAGCGAAAATCAACGTAGCAGCGTAGCAGATCTAGTCTGCCAAGACCAAATACATTAACATCGCCATATTCAATAACATGAGAAAATTATTCAGAGTTGTCATGACTGAAATATATAGTTTTATTTGTTTTCTTATAAATTTTTATGTTCTTAAATGATTTAAAATAATTTTT

Function

NR:

description
vang-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118544 True 291 lncRNA 0.33 1 3615304 3615594

Neighbor

gene id symbol gene type direction distance location
CI01000018_03513125_03558562 SLCO5A1 coding upstream 56584 3511362 ~ 3558720 (+)
CI01000018_03482157_03507502 SULF1 coding upstream 106838 3481433 ~ 3508466 (+)
CI01000018_03468481_03471726 NA coding upstream 143424 3468273 ~ 3471880 (+)
CI01000018_03315696_03388918 NA coding upstream 226386 3315696 ~ 3388918 (+)
CI01000018_03168822_03281088 PREX2 coding upstream 334216 3168822 ~ 3281088 (+)
CI01000018_03630815_03635622 NA coding downstream 15183 3630777 ~ 3635787 (+)
CI01000018_03714508_03725674 NA coding downstream 98914 3714508 ~ 3725930 (+)
CI01000018_03727066_03727226 NA coding downstream 111472 3727066 ~ 3727308 (+)
CI01000018_03865690_03869961 NA coding downstream 249717 3865311 ~ 3870063 (+)
CI01000018_03883336_03887135 ACAA1 coding downstream 267168 3882762 ~ 3887214 (+)
G104221 NA non-coding upstream 30731 3584344 ~ 3584573 (+)
G104219 NA non-coding upstream 47422 3567610 ~ 3567882 (+)
G104206 NA non-coding upstream 168232 3446845 ~ 3447072 (+)
G104199 NA non-coding upstream 177669 3437399 ~ 3437635 (+)
G104191 NA non-coding upstream 190616 3424281 ~ 3424688 (+)
G104249 NA non-coding downstream 57267 3672861 ~ 3673062 (+)
G104255 NA non-coding downstream 72406 3688000 ~ 3688300 (+)
G104257 NA non-coding downstream 74569 3690163 ~ 3690446 (+)
G104336 NA non-coding downstream 196244 3811838 ~ 3812537 (+)
G104337 NA non-coding downstream 199918 3815512 ~ 3817032 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 1629993 1924489 ~ 1985311 (+)
G102895 NA other upstream 2029642 1582913 ~ 1585662 (+)
G104258 NA other downstream 75495 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 754592 4368179 ~ 4375866 (+)
G104670 NA other downstream 1140207 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 1601086 5216452 ~ 5222616 (+)
G106429 NA other downstream 3266017 6881611 ~ 6886325 (+)

Expression


Co-expression Network