RNA id: XM_043259245.1


Basic Information

Item Value
RNA id XM_043259245.1
length 3106
RNA type mRNA
GC content 0.49
exon number 14
gene id auts2b
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11842766 ~ 11855895 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGGAGGGTCCGCTGAGGGAGGGATCACAGGAATGCGCTGGTTCGCTACTGAGGGAGCATTCTTGAGCCGAGCCGAGCTGAGAGCGGCCGGACACGCTCTTTGGAAAGGATCTCAAACCTGCTTTGAGTGGATTTGCGCTTAATCTGTTGGTGGTGAAGGAGCTCAGAGCCTCACGTTTACTGTGTTTGGAGGATTTTACTGGATACCGGTTCAGTCTCTGGAAAGGATTGGTTCAGGATGTTCAGTATCATATACAAGCCCTGATATTCAAAGGGTAAAAGAACAAACAATTTGTCAGAGCTCCTAGGTTTTGGAGGGACGTTTGGTTTAGGAAGCAACTTTTGAACACTTTTGCGTTGAAGTGACTGGGGTGACTGTACTCTGAAAAGCATTGGATAGTTGAAAGAAATTAGCAGTATTTTGGATTACACTGAGAAGGATCATTTCATTGGGATTTTGGGTTGCTCTGACCAACCGAGATATTCCCTCCTCCAAATGCAGGTCTTGCTGATGTTGCTAATAACACAAATGCGAGAGCAAAAAACAACGAGCAAAATGGCACAAGGAGGAAACCATTAGAACCCAAGAAAGACTGAAGGAACAAGCTGTTTGTAGTCACTTTTGTGCACTTGGAGTGCATCAGCACGAGTAAAGAAGAGCATTGTAATCACCCCCCTCTCTAAACACCTCAACATGTTTGCCCCAACGACAGCCctgcctcctcctccttcccTTCTAACAGGAAGTGCTCTGCCAGTGCCCAGCGCACCAGCAACAGCTCCATACACAGATCATGACCTCCTGCGACAGGAGTTAAACTCTCGCTTCCTGGCCTCCCAGACTGTCGATCGAGGAGGGGCTCTAGCTCCCCCGGCATACCTGCGCACCGAGTTCCACCAGCACCagcacacacaccaacacacacatcagcacaCCTTCACTCCATTCCCACAATCCATCCTGCCCAGCCCAGCAGCACCACTGGTGCGTACCCCTGCCAGACAATTTGACAAATATCCTGCTAAAGTGGACACCTTCCATAGACACAACTTGGTCCCGTCCTATCCGTCAGTAATGACTGGAATACCTCCTATGGTTCCACCTGCTGGACCATTCAGCTCTCTCAAGGGAGCTTTTCAGCCCAAGGCTTCCAACCCACTGGATGTGGTGTCAAGACCAGGATCTGTGCCACACCAACTTTTACAGAAAGACTCCAGActtcttgaCCCCATGTGTCCTAAACCAAAGAAACCTGGGAAGTGGTGTGCAATGCATGTCCACATTGCATGGCAAGTTTACCATCATCAGCAAAAAATTAAGAAGCAGATGCAGATTGAGCCGCATAAATTAGACTTTGGTTTTAAGCCCGAGTTTCTGAATCGGTCGCCTGGCTCGAGCTTCATGGGACTGCAGCCACGTGATTTACCCCGTCCTTCCACCATCCTCTCTAATGCAGGTCCCACACACCCTTCAGTTGCACCCTATGGACCCTTACCGCATACCCCAAACAATCTTCACAGTGTAATCCCTCATCATGAGTCTCTTAATAAGCCACTCACTTTTGGAGGCCTGAGTACATTGAGCTCATCTGCTTTTGGAGGACTAGGAAACCCATCACTAACACCAAATGCAGCACATGGGACTAAAGATGGCAAAGCGATTTCAACTTCAAGTGGACAACTGGAGACCTGGAACAGATTGCACCAGACACCTTCATCCTTCCCAACGCCCCCTCTGTGTCCAAGGCCTTCTGAGACTGAGAGAGCTCCCTCCATCCCAGACAAAGCAGCAATTAAAAGAGATTCCCTAGACAACAAAGATGACAAGGAACGGGAGCCAAAAGAGAAATCAAATGGAAGGCATTTGTCCCCCATGAGGAATAGTCCACTGGACAACAAACAACCAACAGAGTCTTTTAAAAGTTCCTCTCCTGATGAACCCAAGGAAGAGGAGCCGGCAAGAGAGAAAACTCAAGCCCAAGAGCTTCCACAACAAACTCGAGACACTGAGGAGCCCAAACACAAAGACATCCAAAGTGACAAAAGAGAAAAGGATGTCAAAGGTGAGCAGCAGCAACCCGCTGAGGACAAGCCAGCAGGAAAAGAGAGTTCATCACCCAAGCAACAGAGAGAGGATCTCAAGCGGCCAAACAGTGATAGCCAACCCTGGGAGCCAGCTGAGAAGAAGATTAGAGTCGAGTATGAACCACATGCCAAGAGCAGCAAGGTGAGAGTgaaggaggagaagagagacgACCAGGACCATGAAGTTATAACACACCACAAAGTTTTGGAAAAACAGTGGCAGGATCCCAGAGGCCCTCTTATTAACCCTTCACCTCTTTCCACTCTTCCTTTGCCAATAGCAATCCCAACTGGCCACCCTGGTCTTGACAGGACTAGGCTGGTCTCACCTTTTCTGGGAATGGGTCCATTACCTGGAGCCGAGAGGCTGCCTTATTCACCTCAGCACTGGGAATCTATGCGGAATGTTTATCGAGGTTTAGATCTTCCTCGTAGGGACTCCTTGGGCAAAGACCTCTTAATAAGAACCGACCCCCTGCAACGTGTCATGATGGGGCACCCTGTTTACCCACGAGAGCCATTTCTGCAGTCCATGGCCCTGGAGCAAAGGAGTCATCTAGAGGAACGACAGCGCCTGGCCTTCCTGAGAGAAGAAAGCGAGCGTAGCCGCCTGCTGGCTATGCATCATACTGCACTGGATCCTCACTTAGCACCTCCAGGACTCCTCGCAGCGGGTTACCCCAGCACAGGGCTCCCACATTACGCCTCGCTTAGTAGGACTCTACCAGCTGCTTATGTACATGCCCAACCACATCCACTTTTTCCAATGCTGGCAGCACGGCCAGGGTCTCCGAGACGGATGACCCCTCTTACAGACAGACCTGTTTCGCACCCACACAGAGACACTGAGACTCGGTGAGCTTGACTTAATCAGAAACTAATGGACTTATATATATCAAGCACTTCATGTGAAATAACGTGTAGTCGAAATGTACAGTGTtggaaatgacttttttttttttttttggtcaaaaaaaaaccaaacaaaaaaaacattaaaatgacttctgaggaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156299 lncRNA downstream 29117 11813157 ~ 11813649 (-) True G105804
TU156273 lncRNA downstream 80346 11762201 ~ 11762420 (-) True G105789
TU156259 lncRNA downstream 116890 11725422 ~ 11725876 (-) True G105784
TU156258 lncRNA downstream 119324 11723225 ~ 11723442 (-) True G105783
TU156251 lncRNA downstream 137768 11702884 ~ 11704998 (-) True G105776
TU156578 lncRNA upstream 89170 11945022 ~ 11947427 (-) True G106002
TU156581 lncRNA upstream 94131 11949983 ~ 11951020 (-) True G106003
TU156576 lncRNA upstream 95429 11951281 ~ 12043022 (-) True G106001
TU156591 lncRNA upstream 155463 12011315 ~ 12012202 (-) True G106010
TU156596 lncRNA upstream 160546 12016398 ~ 12020448 (-) True G106015
XM_043258971.1 mRNA downstream 80997 11743852 ~ 11761769 (-) False picalmb
XM_043258972.1 mRNA downstream 80999 11743852 ~ 11761767 (-) False picalmb
XM_043258973.1 mRNA downstream 80999 11743852 ~ 11761767 (-) False picalmb
XM_043258970.1 mRNA downstream 80999 11743852 ~ 11761767 (-) True picalmb
XM_043258981.1 mRNA downstream 81000 11748185 ~ 11761766 (-) False picalmb
XM_043258841.1 mRNA upstream 15907 11871759 ~ 11899452 (-) True med13b
XM_043259088.1 mRNA upstream 46223 11902075 ~ 11931708 (-) True exoc3l2b
XM_043259087.1 mRNA upstream 46223 11902075 ~ 11926514 (-) False exoc3l2b
XM_043258916.1 mRNA upstream 77079 11932931 ~ 11943574 (-) True ppp1r14ab
XM_043258588.1 mRNA upstream 167212 12023064 ~ 12026460 (-) True rnaset2l
TU156053 other downstream 336589 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 485218 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 510868 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 538204 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 750053 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 1600129 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 1891184 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 2022733 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 2028068 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 2064217 13920069 ~ 13925707 (-) False cluha

Expression Profile