RNA id: XM_043259614.1


Basic Information

Item Value
RNA id XM_043259614.1
length 1997
RNA type mRNA
GC content 0.45
exon number 11
gene id pdzd3a
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13347060 ~ 13353962 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGGTAGAACAAGGAGGAGCTATACTGACtaaagcattttaatgcttcatttaaatgtgtacCTTGCCCCCTCACAAAGCCCAGGGCTCGGCCAGCAGTATCATGAGATTCACCGCAGAGCCAACGGATGCCCCAGAGTTACCGAAGAAGTTCACCTTCAACCCGAAAGAAGGGATTGACAATCCTGCTTTAGTGATCTCTGACGACACAGAGCCTGATGTGCATCCGCGGATTTGTGTTCTGAAGCGGGAAGAGGGACAGGGCTTCGGCTTCTACCTGAGTAAAGACGGTGGCTCCAGGGGACACGTGGTGCGTCAGGTGGAGCCTTGGAGCAGTGCAGAGCGGGGTGGGCTGAAGAAGGGGGACCGCATTTTGGAGGTCAATGAGGACTTTGTGGATGACAAGGAGCACTCGACTGTGGTGCTGAAGGTGCAGGCGTCTGGGCTGAAGCTATATCTATTAGCTCTGAGTGCTCAGGATTATGAGTTTGCAGTTTCAGAAGGAAGAGACCTCATGTCGCTCGCCAGCGCTTACCGTCCTATAGAGGGCTGTTCTCGCCCACGGTTGTGTTACATCACTAAAGATCCTGGCAGAGGCTTGGGCCTCAACATCATTCCTATTGAAGGTGAGCGAGGCCGTTATCGTCTCAGCCCAGTGACTGATGGTCCAGCTGAGAAAGCCGGAGTCCAGAATGGAGACAGGCTGATCTGGATCAATGGAGCTATGATTTCAACACTCAGTTATGCAGCACTGTCAAAAATGGTGAAGAAAtgtgaagatcatgtgactgtCTTGGTAATTGACAGCAGGAGTGAAGCTTGTTATAATCGCATGGGGTTACCCATAATACCTGCTTTTGCCAAAACACATAATCTACCTCACAGACCAAAAACACTACACCTGACTCAAGGACCACAAGGATACGGGTTCCTCCTAAGGCAAGAGAAGTTACGATCTGGACGTATTGCTCATGTGTTACGAGAGATCGACCCCTGCAGCCCAGCTGAGACTGTAGGAATGGAGGAAGGAGAGCTTGTGTTAGCGGTAAACGGGGAGCAGGTGGAGGATGCAGAGCATGAGGGCATCGTCAGCAAAATAAGGCAAAGCGGCCAGCAGGTCACCCTAACCACCATCTCCATTCTTGGCAGAGACTATTACACACAgCTGGGTATTTCTCCATTGCTGTTCTATGAAGACCATATTCCAAAAAGGGAACAGTTTCCTGATCCTCCTTCGTCACATCAAGAGggacatcaaaatccaccacaGTCTCGACTTTGTGTGCTTCACAAGGAGGCTGCGGGATACGGCTTCAATCTAGGCTGTGTTCAGAATAAGCCTGGAGCGTATATTGGTCAGGTGATGACGGGGAGTGCAGGAGAGAGAGCGGGGCTGTTTGAGGGAGATGTTGTTGTAGAGGTGAATGGACAGAATGTGGAGGAAGAGTGTTTTGATGAAGTGGTGAGGTTGATAAAAGAGGGAGGAACTCCTCTCAGTCTTCTAGTCATGGAGAGACTCGGATATGAGAAACGGAGAAATACCAGACAGCCTGTCCCCGAGGCATCACAGGATGATTTTGTATAAATCAATATATACAGTCaggtaaaacattttgttaatttcttaatttaacatttaaaacgaGCAACtactttattaacatttataaagaTTCTTgtatatattgcaaaaatattgacaaaagggtaacattttgtcagtaaccacatttattattcaatcagtgtcattatttaatgcaaccaaaacaaatacaaatacaaaatgtattaaacaatttgagtacaaatgtaatataaagaTTATGATATCATAGAGATGTCTACAGTCAGGTATGAagtgatttatatttttgtaaagtatGAAAGCATATTAAAACCTCAAATATCTGAAAATCTGTTTACACCACATCCTGGAAAACTGTATGTAGAGATGTGATTTCATGTTCAAGATAAATCATTTGTAAGATGTGTA

Function

GO: NA

KEGG:

id description
K24059 PDZD3; PDZ domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157252 lncRNA downstream 401687 12945087 ~ 12945373 (-) True G106442
TU156916 lncRNA downstream 506663 12838764 ~ 12840397 (-) True G106211
TU156875 lncRNA downstream 605986 12738051 ~ 12741074 (-) True G106184
TU156805 lncRNA downstream 674612 12672187 ~ 12672448 (-) True G106137
TU156746 lncRNA downstream 748487 12598286 ~ 12598573 (-) True G106099
TU157380 lncRNA upstream 252222 13606184 ~ 13606897 (-) True G106525
TU157402 lncRNA upstream 313609 13667571 ~ 13669225 (-) False G106541
TU157403 lncRNA upstream 313609 13667571 ~ 13669225 (-) False G106541
TU157404 lncRNA upstream 313609 13667571 ~ 13669225 (-) False G106541
TU157405 lncRNA upstream 313609 13667571 ~ 13669225 (-) False G106541
XM_043259611.1 mRNA downstream 4057 13332487 ~ 13343003 (-) True ube4a
XM_043258585.1 mRNA downstream 16036 13300482 ~ 13331024 (-) True kmt2a
XM_043258183.1 mRNA downstream 48250 13294766 ~ 13298810 (-) True c1qtnf5
XM_043259893.1 mRNA downstream 64829 13254308 ~ 13282231 (-) False mcamb
XM_043259613.1 mRNA upstream 139 13354101 ~ 13362854 (-) False nlrx1
XM_043259612.1 mRNA upstream 139 13354101 ~ 13362853 (-) True nlrx1
XM_043258299.1 mRNA upstream 9542 13363504 ~ 13373446 (-) False abcg4b
XM_043258298.1 mRNA upstream 9542 13363504 ~ 13373446 (-) False abcg4b
XM_043258300.1 mRNA upstream 9542 13363504 ~ 13371589 (-) True abcg4b
TU156053 other downstream 1840883 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 1989512 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 2015162 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 2042498 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 2254347 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 102019 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 393074 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 524623 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 529958 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 566107 13920069 ~ 13925707 (-) False cluha

Expression Profile